View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19593_low_9 (Length: 336)
Name: NF19593_low_9
Description: NF19593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19593_low_9 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 42519764 - 42519628
Alignment:
| Q |
12 |
aagaatatatgttattattttaaacttttgatcgaaatatggatgagcatctatattaactcaagttgtttattttgtcgataaataaaaacttagctgt |
111 |
Q |
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| T |
42519764 |
aagaatatatgttattattttaaacttttgatagaaatatggatgagcatctatattaactcaagttgtttattttgtcgataaataaaaacttagctgt |
42519665 |
T |
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| Q |
112 |
ttatataataaaaatacctgacagcatatatctaaac |
148 |
Q |
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| T |
42519664 |
ttatataataaaaatacctgacagcatatatctaaac |
42519628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 42519560 - 42519455
Alignment:
| Q |
215 |
aacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagcatgtg |
314 |
Q |
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| T |
42519560 |
aacacaatggctggaggttacatagcacaaggctctggaaaagaatatccaggaaaattcaccattagggtgttcatcatttgcatgactgcagcatgtg |
42519461 |
T |
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| Q |
315 |
gaggct |
320 |
Q |
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|||||| |
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| T |
42519460 |
gaggct |
42519455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 1241333 - 1241223
Alignment:
| Q |
210 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
309 |
Q |
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| T |
1241333 |
gaaagaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
1241234 |
T |
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| Q |
310 |
atgtggaggct |
320 |
Q |
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|| || ||||| |
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| T |
1241233 |
atttgaaggct |
1241223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1241567 - 1241520
Alignment:
| Q |
23 |
ttattattttaaacttttgatcgaaatatggatgagcatctatattaa |
70 |
Q |
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| T |
1241567 |
ttattattttaaacttttgatcgaaatatggatgagcatctatattaa |
1241520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 270 - 160
Alignment:
| Q |
210 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
309 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
270 |
gaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
171 |
T |
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| Q |
310 |
atgtggaggct |
320 |
Q |
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| T |
170 |
atttggaggct |
160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 41972962 - 41972852
Alignment:
| Q |
210 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
309 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
41972962 |
gaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
41972863 |
T |
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| Q |
310 |
atgtggaggct |
320 |
Q |
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| T |
41972862 |
atttggaggct |
41972852 |
T |
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