View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19594_low_1 (Length: 271)
Name: NF19594_low_1
Description: NF19594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19594_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 49303190 - 49303424
Alignment:
| Q |
18 |
gtttccgtatgcatgcatggataaagaatatatcattttgtagacttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgac |
117 |
Q |
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| T |
49303190 |
gtttccgtatgcatgcatggataaagaatatatcgttttgtagacttaattgatcaatcactttcaacgattttgaaaatgacccaaatatctaatggac |
49303289 |
T |
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| Q |
118 |
gattctccacttttctacttttctttcccaacaacaagccttaatttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaa |
217 |
Q |
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| T |
49303290 |
gattctccacttttctacttttctttcc---caacaagccttaatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaa |
49303386 |
T |
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| Q |
218 |
caaacaacacaccaaaacttcaagtataactaacacac |
255 |
Q |
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| T |
49303387 |
caaacaacacaccaaaacttcaagtataactaacacac |
49303424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 49289548 - 49289743
Alignment:
| Q |
60 |
gacttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttctttcccaacaacaagcctt |
159 |
Q |
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| T |
49289548 |
gacttaattgatcaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttcttttccaacaacaagcctt |
49289647 |
T |
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| Q |
160 |
aatttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacac |
255 |
Q |
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| T |
49289648 |
aatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacac |
49289743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 49296499 - 49296694
Alignment:
| Q |
60 |
gacttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttctttcccaacaacaagcctt |
159 |
Q |
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| T |
49296499 |
gacttaattgatcaatcactttcaatgattttgaaagtgacccaaacatctaatcgacgattctccacttttctacttttcttttccaacaacaagcctt |
49296598 |
T |
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| Q |
160 |
aatttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacac |
255 |
Q |
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| T |
49296599 |
aatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataactaacacac |
49296694 |
T |
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