View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19595_high_2 (Length: 497)
Name: NF19595_high_2
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19595_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 32320736 - 32320269
Alignment:
| Q |
18 |
gacattgacaaatcattgccgacgtgagttgagtggttatcgctgtccaaacaatttattttgacatcattttgcattgtggtgtactagtatgaattgt |
117 |
Q |
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| T |
32320736 |
gacattgacaaatcattgccgacgtgagttgagtggttatcgctgtccaaacaatttattttgacatcattttgcattatggtgtactagtatgaattgt |
32320637 |
T |
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| Q |
118 |
ggtaagtgtacattgttactagcttgtcgttaccttgccctttgcagtgtgttttactatatcatgaaagcacttgtgtccattaccatgagacaaaatt |
217 |
Q |
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| T |
32320636 |
ggtaagtgtacattgttactagcttgtcgttaccttgccctttgcagtgtgttttactatatcatgaaagcacttgtgtccattaccatgagacaaaatt |
32320537 |
T |
|
| Q |
218 |
gtgtaatatgatcatgctcctgaagacagctgaggagtgtttatagcatagtactaaataattaacaagtgtttcaaaaaatgtttgtgtttgcaatcaa |
317 |
Q |
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| T |
32320536 |
gtgtaatatgatcatgctcctgaagacagctgaggagtgtttatagcatagtactaaataattaacaagtgtttcaaaaaatgtttgtgtttgcaatcaa |
32320437 |
T |
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| Q |
318 |
gaatggtcaagtctcagcaataattcaatacaattattcacaattttaatgatcacaagctgccatttgaaaccttgatactattgatagtgttgtgcca |
417 |
Q |
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| T |
32320436 |
gaatggtcaagtctcagcaataattcaatacaattattcacaatttcaatgatcacaagctgccatttgaaaccttgatactattgatagtgttgtgcca |
32320337 |
T |
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| Q |
418 |
cttatgtatgtttgctcaatcaggaggaacaatttgtacacactaattgaaggtagttatgatgatga |
485 |
Q |
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| T |
32320336 |
cttatgtatgtttgctcaatcaggaggaacaatttgtacacactaattgaaggtagttatgatgatga |
32320269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 32322243 - 32322187
Alignment:
| Q |
166 |
gtgttttactatatcatgaaagcacttgtgtccattaccatgagacaaaattgtgtaat |
224 |
Q |
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| T |
32322243 |
gtgttttactatatcatgaaagcagttatgtccatga--atgaggcaaaattgtgtaat |
32322187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 32321835 - 32321750
Alignment:
| Q |
356 |
cacaattttaatgatcacaagctgccatt------tgaaaccttgatactattgatagtgttgtgccacttatgtatgtttgctca |
435 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||| || |||||| ||||| |||| ||||||| ||| |||| |
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| T |
32321835 |
cacaatttcaatgatcacaagctgccatttgaatttgaaaccttgatagtaatgatagcgttgtaccacctatgtatattttctca |
32321750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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