View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19595_high_4 (Length: 375)

Name: NF19595_high_4
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19595_high_4
NF19595_high_4
[»] chr3 (14 HSPs)
chr3 (252-362)||(41985645-41985755)
chr3 (262-358)||(41980875-41980971)
chr3 (266-362)||(9494811-9494907)
chr3 (263-362)||(9336557-9336656)
chr3 (263-362)||(9329853-9329952)
chr3 (263-362)||(9343862-9343961)
chr3 (263-362)||(9448331-9448430)
chr3 (194-239)||(41981018-41981063)
chr3 (178-246)||(41985785-41985856)
chr3 (263-362)||(9407383-9407482)
chr3 (266-362)||(9425590-9425686)
chr3 (263-311)||(9695616-9695664)
chr3 (263-302)||(9485969-9486008)
chr3 (263-311)||(9395327-9395375)
[»] chr8 (4 HSPs)
chr8 (181-246)||(44688679-44688744)
chr8 (178-246)||(13170575-13170643)
chr8 (252-318)||(13170673-13170739)
chr8 (260-360)||(44688782-44688882)
[»] chr2 (1 HSPs)
chr2 (266-362)||(20694304-20694400)
[»] chr7 (1 HSPs)
chr7 (263-310)||(450111-450158)
[»] chr1 (3 HSPs)
chr1 (182-246)||(18991358-18991422)
chr1 (323-362)||(18991221-18991260)
chr1 (322-362)||(4439877-4439917)
[»] chr6 (2 HSPs)
chr6 (263-338)||(7025797-7025872)
chr6 (263-362)||(7046856-7046955)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 41985755 - 41985645
Alignment:
Q  252 tggttttaggcttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgt 351  Q
    |||||| | |||||||||||| || |||||||||||||| |||||||||||||||||| || |||||   ||||||||||||||||| ||||||||||||    
T  41985755 tggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgt 41985656  T
Q  352 tcgttttctgc 362  Q
    |||||||||||    
T  41985655 tcgttttctgc 41985645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 41980971 - 41980875
Alignment:
Q  262 cttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgtttt 358  Q
    ||||||||||||||||||| | |||| || ||||||||||||||||||||| |||||   ||||||||||||||||| |||||||||||||||||||    
T  41980971 cttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtttt 41980875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 9494811 - 9494907
Alignment:
Q  266 atgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    ||||| ||||||||||||||||||| | || |||||| || |||| | |||||   ||||| ||||||||||| |||||||||||||||||||||||    
T  9494811 atgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgc 9494907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 9336656 - 9336557
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    ||||||||||||||||||||||||| || || |  ||||||||| |||||  ||||   ||||  ||||||||||| |||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 9329952 - 9329853
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    ||||||||||||||||||||||||| || || |  |||||||||||| ||  ||||   ||||  ||||||||||| |||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 9343961 - 9343862
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    |||||||||||| ||||||||||| ||| ||||| ||||| ||||| ||   ||||   ||||| ||||||||||| ||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 9448430 - 9448331
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    |||||||||||| |||| |||||||||| ||||||||||| ||||| ||   ||||   ||||| ||||||||||| |||||||  ||||||||||||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 41981063 - 41981018
Alignment:
Q  194 tgaaattcctggtagagagtgagggggagttattgctagtggacat 239  Q
    ||||||||||||||||||||||||| || |||||||||||||||||    
T  41981063 tgaaattcctggtagagagtgagggtgaattattgctagtggacat 41981018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 41985856 - 41985785
Alignment:
Q  178 gtggatggagggaacatgaaattcctggtagagagtgaggggg---agttattgctagtggacatctatgac 246  Q
    |||||||||||| |||||||||||||||||||||||||||| |   |||| |||||||| ||||| ||||||    
T  41985856 gtggatggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgac 41985785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 9407482 - 9407383
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    ||||||||||||| ||||| |||||| | || | |||||| ||||||| | |||||   ||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 9425686 - 9425590
Alignment:
Q  266 atgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    |||||||||| ||||| |||||| | || |||||||| ||||||| | |||||    |||| ||||||||||| | |||||||||||| ||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgc 9425590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 9695616 - 9695664
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgac 311  Q
    ||||||| || ||||||||||||||||| ||||| ||||||||||||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgac 9695664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 9485969 - 9486008
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggt 302  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggt 9486008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 9395375 - 9395327
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgac 311  Q
    |||||||||||||||||||||||||| | || || ||||| ||||||||    
T  9395375 ttgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgac 9395327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 44688679 - 44688744
Alignment:
Q  181 gatggagggaacatgaaattcctggtagagagtgagggggagttattgctagtggacatctatgac 246  Q
    ||||||||| |||| |||||||||||||||||||| || ||||| |||||||||||||||||||||    
T  44688679 gatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgac 44688744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 13170575 - 13170643
Alignment:
Q  178 gtggatggagggaacatgaaattcctggtagagagtgagggggagttattgctagtggacatctatgac 246  Q
    |||||||||||| ||||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||    
T  13170575 gtggatggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgac 13170643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 13170673 - 13170739
Alignment:
Q  252 tggttttaggcttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgttta 318  Q
    |||||| | |||||||||||| || |||||||| ||||| |||||||||||||||||| || |||||    
T  13170673 tggtttaaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagttta 13170739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 360
Target Start/End: Original strand, 44688782 - 44688882
Alignment:
Q  260 ggcttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttc 359  Q
    ||||||||||||| | |||  |||||||| | ||||||||||| ||||| ||| |||||    ||||| |||||||||| ||||||| || ||| |||||    
T  44688782 ggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttc 44688881  T
Q  360 t 360  Q
    |    
T  44688882 t 44688882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 20694304 - 20694400
Alignment:
Q  266 atgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    ||||||| ||||||||||| ||||| ||||||||||| |  |||||  ||||    ||||| |||||||| || |||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgc 20694400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 450111 - 450158
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttga 310  Q
    |||||||||||||||||||||||||||| || || |||||||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttga 450158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 18991422 - 18991358
Alignment:
Q  182 atggagggaacatgaaattcctggtagagagtgagggggagttattgctagtggacatctatgac 246  Q
    |||||||| | ||||||||| |||||||| |||| || ||||| |||||||||||||||| ||||    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgac 18991358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 362
Target Start/End: Complemental strand, 18991260 - 18991221
Alignment:
Q  323 atagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  18991260 atagggttttgttcttggggaatggatgttcgttttctgc 18991221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 4439917 - 4439877
Alignment:
Q  322 gatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    ||||| |||||||| || |||||||||||||||||||||||    
T  4439917 gatagggttttgtttttggggaatggatgttcgttttctgc 4439877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 7025872 - 7025797
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttctt 338  Q
    ||||| |||||| |||| |||||||||| ||||| ||||| ||||||||| |||||   ||||| |||||||||||    
T  7025872 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 7046955 - 7046856
Alignment:
Q  263 ttgatgtgtttaggcttgatgagaaggaaaagaaatgggtcaagttgacgcgtttatatgatagagttttgttcttagggaatggatgttcgttttctgc 362  Q
    ||||| |||||| |||| |||||||||| ||||| ||||| ||||| ||| |||||   |||| |||||||||||| ||||    |||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgc 7046856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University