View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19595_high_9 (Length: 259)
Name: NF19595_high_9
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19595_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 2794153 - 2793981
Alignment:
| Q |
73 |
attgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcc |
172 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794153 |
attgaatgtggaaggtgaattgcagaacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcc |
2794054 |
T |
|
| Q |
173 |
cagcctaaaaaacaagcaagttcaacgcttatgattcaaacaacgaaaaaagaaatagttgagtagtttcacc |
245 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
2794053 |
cagcctaaaaatcaagcaggttcaacgcttatgattcaaacacggaaaaaaaaaatagttgagtagtttcacc |
2793981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 2794246 - 2794182
Alignment:
| Q |
6 |
cataggcaagagacttcatattacgctgcgttgaatatcatacattgaaaaatagtgttttatggacat |
74 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
2794246 |
cataggcaagaaacttcatat----ctgtgttgagtatcatacgttgaaaaatagtgttttttggacat |
2794182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 48669108 - 48668982
Alignment:
| Q |
72 |
cattgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatc |
171 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
48669108 |
cattgaatgtggaaggtgacctgcagcacttaccttttcggtcaaatcaagtgctccactgataattgtcgtctcatcatgtgtaagctcgccccctttc |
48669009 |
T |
|
| Q |
172 |
ccagcctaaaaaacaagcaagttcaac |
198 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
48669008 |
ccagcctaaaaaacaagaaagttcaac |
48668982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 16389911 - 16389734
Alignment:
| Q |
13 |
aagagacttcatattacgctgcgttgaatatcatacattgaaaaatagtgttttatggacattgaatgtggaaggtgaattgcaacacttaccttttggg |
112 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||||||||| | || | ||| |||||| |||| ||||||||||||| |||||||||||| || |
|
|
| T |
16389911 |
aagaaacttcatattcttctgcattgaatatcatacattgaaaatttgtatcgtattgacattagttgtgaaaggtgaattgcagcacttaccttttcgg |
16389812 |
T |
|
| Q |
113 |
tcaagtcaagtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcccagcctaaaaaacaagca |
190 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
16389811 |
tcaaatcaagtgctccactgataattgttgtctcatcatgtgtaagttcgccccctttcccagcctaaaaaacaagca |
16389734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University