View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19595_low_11 (Length: 236)
Name: NF19595_low_11
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19595_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 37842476 - 37842689
Alignment:
| Q |
8 |
gaaactaaaaatgctgcaaagtctggatatatccttgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
37842476 |
gaaactaaaaatgctgcaaagtctggatatatccttgaacaatttgacgggaagcatagacgcacttggaagtcttgtttcattaattgaggtcaatatt |
37842575 |
T |
|
| Q |
108 |
tcttacaatctcttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatatgtgtcagtt |
207 |
Q |
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||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37842576 |
tctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagtt |
37842675 |
T |
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| Q |
208 |
gtttaagttgcatt |
221 |
Q |
| |
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|||||||||||||| |
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| T |
37842676 |
gtttaagttgcatt |
37842689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 37831164 - 37831366
Alignment:
| Q |
19 |
tgctgcaaagtctggatatatccttgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatct |
118 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||| | || |||| |||||||||||| |||| ||| || ||| ||||||||||||| |
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| T |
37831164 |
tgctgcaaagtctggatatatccttgaacaatttaacaggaagcatatatgctcttgaaagtcttgtttcgttaactgatatcaatgtttcttacaatct |
37831263 |
T |
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| Q |
119 |
cttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatatgtgtcagttgtttaagttgc |
218 |
Q |
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| T |
37831264 |
cttcaatggttctgtaccaacaggtctaatgaagttactgaattcctcaccatcatcattcatgggtagtcctctcctatgtgttagttgtttgagttgc |
37831363 |
T |
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| Q |
219 |
att |
221 |
Q |
| |
|
||| |
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| T |
37831364 |
att |
37831366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 37836868 - 37837070
Alignment:
| Q |
19 |
tgctgcaaagtctggatatatccttgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatct |
118 |
Q |
| |
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||||||||||||| ||||||||||| ||||| || |||||||||||||| || |||||| |||||||||||||||||||| | |||||||||| |||||| |
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| T |
37836868 |
tgctgcaaagtctagatatatccttaaacaatttaacaggaagcatagatgctcttggaggtcttgtttcattaattgaggtcaatatttctttcaatct |
37836967 |
T |
|
| Q |
119 |
cttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatatgtgtcagttgtttaagttgc |
218 |
Q |
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||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| | |||| |
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| T |
37836968 |
cttcaatggatctgtaccaacaggtctaatgaggttattgaattcctcaccatcatcattcatgggtaatcctttcctatgtgtaagttgtttgaattgc |
37837067 |
T |
|
| Q |
219 |
att |
221 |
Q |
| |
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||| |
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|
| T |
37837068 |
att |
37837070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 37850250 - 37850428
Alignment:
| Q |
22 |
tgcaaagtctggatatatccttgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctctt |
121 |
Q |
| |
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|||||||||| ||||||||||||||||| || |||||||||||||| || ||||| |||||||||||||||||||| | |||||||||| ||||||||| |
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| T |
37850250 |
tgcaaagtctagatatatccttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctctt |
37850349 |
T |
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| Q |
122 |
caatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatatgt |
200 |
Q |
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| |||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
37850350 |
ccatggttctgtaccaaaaggtctaatgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctatgt |
37850428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 28089393 - 28089548
Alignment:
| Q |
55 |
caggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagtt |
154 |
Q |
| |
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|||||| ||| || || |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||| || |||| ||| || |
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| T |
28089393 |
caggaatcatcgatgctcttggagatcttgtttcattaattgaggtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatgagttt |
28089492 |
T |
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| Q |
155 |
attgaattcctcaccatcatcattcatgggtaatcctatcatatgtgtcagttgtt |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||| | ||||||| |
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| T |
28089493 |
attgaattcctcaccatcatcattcatgggcaatcctctcatatgttttagttgtt |
28089548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 36865615 - 36865807
Alignment:
| Q |
19 |
tgctgcaaagtctggatatatccttgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatct |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||| | ||||||| ||||||||| |
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| T |
36865615 |
tgctgcaaagcttggatatatccttgaacaatttgacaggaagcatagatgctcttgaaggtcttgtttcattaattgaggtcaatatttattacaatct |
36865714 |
T |
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| Q |
119 |
cttcaatggttctataccaacaggtctattgaagttattgaattcctcaccatcatcattcatgggtaatcctatcatatgtgtcagttgttt |
211 |
Q |
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|||||||||||| |||||||| ||||| | | |||||||||||||||||| ||||| ||||||||||||||| || ||||||| || ||||| |
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| T |
36865715 |
tttcaatggttctgtaccaacacgtctaattaggttattgaattcctcaccgtcatcgttcatgggtaatcctctcctatgtgttagatgttt |
36865807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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