View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19595_low_12 (Length: 228)
Name: NF19595_low_12
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19595_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 6785389 - 6785602
Alignment:
| Q |
1 |
gacattctcatgttgttgagttttgctttcaaacatagtatgtgtccataatattgtaagtgatcttagaattcttatgctacacttaattgagtagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6785389 |
gacattctcatgttgttgagttttgctttcaaacatagtatgtgtccataatattgtaagtgatcttagaattcttatgctacacttaattgagtagatg |
6785488 |
T |
|
| Q |
101 |
aaaattggaaatttgaaaaaggaaacacaacagttcgtgagtcactggcagttataaaactgtcttggagtcagtttagagagtgtatgttaactccaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6785489 |
aaaattggaaatttgaaaaaggaaacacaacagttcgtgagtcactggcagttataaaactgtcttggagtcagtttagagagtgtatgttaactccaaa |
6785588 |
T |
|
| Q |
201 |
gagtgtaggataag |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6785589 |
gagtgtaggataag |
6785602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 6798069 - 6798123
Alignment:
| Q |
75 |
ttatgctacacttaattgagtagatgaaaattggaaatttgaaaaaggaaacaca |
129 |
Q |
| |
|
|||| |||||| ||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
6798069 |
ttattctacacctaattgaatagattaaaattagaaatttgaaaaaggaaacaca |
6798123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 6526332 - 6526389
Alignment:
| Q |
56 |
gtaagtgatcttagaattcttatgctacacttaattgagtagatgaaaattggaaatt |
113 |
Q |
| |
|
||||||| ||| || ||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
6526332 |
gtaagtgctctcagcattcttaggttacacttaactgagtagatgaaaattggaaatt |
6526389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 6549136 - 6549193
Alignment:
| Q |
73 |
tcttatgctacacttaattgagtagatgaaaattggaaatttgaaaaaggaaacacaa |
130 |
Q |
| |
|
||||| ||||||||||| || |||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
6549136 |
tcttaggctacacttaactgcgtagatcaaaattggaaattagaaaaatgaaacacaa |
6549193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 6847908 - 6847968
Alignment:
| Q |
58 |
aagtgatcttagaattcttatgctacacttaattgagtagatgaaaattggaaatttgaaa |
118 |
Q |
| |
|
||||| ||| || ||||||| ||||||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
6847908 |
aagtgctctcagcattcttaggctacacttaactgagtatatgaaaattggaaattagaaa |
6847968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University