View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19595_low_3 (Length: 431)
Name: NF19595_low_3
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19595_low_3 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 37842009 - 37842427
Alignment:
| Q |
13 |
aatatcagcgggccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatggaacaaatttgcacgacatataccatcagagt |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||| |||||||||||||||||| |||||||||||||| |
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| T |
37842009 |
aatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaaggaacaaatttgcacgacttataccatcagagt |
37842108 |
T |
|
| Q |
113 |
tgggaaacctattgaatattgtgattttggaactttctcacaataacttggaaggtcctctgccacatcagctgtcaaattgtactaaaatgaatcgttt |
212 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | | ||| ||||||| |
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| T |
37842109 |
tgggaaacctattgaatcttgtgattttggaactttctcacaacaacttggaaggtcctctgccacatcagctgtcaaactgtagtcacatggatcgttt |
37842208 |
T |
|
| Q |
213 |
tgatgtgggattcaatttcctaaatggatcactcccatcaagtttgagaagttggacaaacataaccacattgattttaagagaaaattacttcacagga |
312 |
Q |
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|||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842209 |
tgatataggattcaatttcctaaatggatcactcccatcaaatttgagaagttggacaaacataaccacattgattttaagagaaaattacttcacagga |
37842308 |
T |
|
| Q |
313 |
ggtatcccagagtttttggctaaatttagcaaccttcgggagttacaacttggtgaaaatttgcttggaggaaaaattcctcaatcgattgtaacaatgc |
412 |
Q |
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||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
37842309 |
ggtatcccagagtttttagctaaatttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcctcgatcgattgtaacattgc |
37842408 |
T |
|
| Q |
413 |
gtaatttgttctatgggtt |
431 |
Q |
| |
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||||||||||||||||||| |
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| T |
37842409 |
gtaatttgttctatgggtt |
37842427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 393
Target Start/End: Original strand, 37849780 - 37850142
Alignment:
| Q |
28 |
attccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatggaacaaatttgcacgacatataccatcagagttgggaaacctattga |
127 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| | ||||||||| || |||||||||| | | |
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| T |
37849780 |
attccatcaagtttgggaaattgcacaaatcttacatacattaatttgtcaaggaacaaatttgcacggctcataccatcacagctgggaaaccttgtaa |
37849879 |
T |
|
| Q |
128 |
atattgtgattttggaactttctcacaataacttggaaggtcctctgccacatcagctgtcaaattgtactaaaatgaatcgttttgatgtgggattcaa |
227 |
Q |
| |
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| ||||||||||||| |||||| |||| |||||||||||| |||| | ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
37849880 |
accttgtgattttggatctttctaacaa---cttggaaggtccattgcctcttcagctgtcaaattgtactaaaatggatcattttgatgtgggattcaa |
37849976 |
T |
|
| Q |
228 |
tttcctaaatggatcactcccatcaagtttgagaagttggacaaacataaccacattgattttaagagaaaattacttcacaggaggtatcccagagttt |
327 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
37849977 |
tttcctaaatggatcagtcccatcaagtttgggaagttggagaaacataaccacattgattttaagagaaaattacttcactggaggtatcccagggttt |
37850076 |
T |
|
| Q |
328 |
ttggctaaatttagcaaccttcgggagttacaacttggtgaaaatttgcttggaggaaaaattcct |
393 |
Q |
| |
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||| | || |||| |||||| || |||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
37850077 |
ttgccaaattttaacaacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcct |
37850142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 37836390 - 37836805
Alignment:
| Q |
13 |
aatatcagcgggccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatggaacaaatttgcacgacatataccatcagagt |
112 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||||||||||| |||||||||||||| ||||| || ||||||| |||||| | | ||| | |||||| |
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|
| T |
37836390 |
aatatcagtggaccagttccatcaagtttgggaaattgcaaaaatctcacatacagtaatttgtcgaggaacaattttgcagggctcatatcgacagagt |
37836489 |
T |
|
| Q |
113 |
tgggaaacctattgaatattgtgattttggaactttctcacaataacttggaaggtcctctgccacatcagctgtcaaattgtactaaaatgaatcgttt |
212 |
Q |
| |
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| || || || ||| | ||||||||||||| ||||||||||| ||||||||||||||| | |||| || |||||||||||| |||||||| ||| || |
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| T |
37836490 |
taggtaagcttgtgagtcttgtgattttggatctttctcacaacaacttggaaggtcctttaccactccaactgtcaaattgttctaaaatggatcagtt |
37836589 |
T |
|
| Q |
213 |
tgatgtgggattcaatttcctaaatggatcactcccatcaagtttgagaagttggacaaacataaccacattgattttaagagaaaattacttcacagga |
312 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
37836590 |
tgatgtgggattcaatttcctaaatggaacactcccatcaagtttgagaagttggagaaatataaccacattgattttaagagaaaattacttcactgga |
37836689 |
T |
|
| Q |
313 |
ggtatcccagagtttttggctaaatttagcaaccttcgggagttacaacttggtgaaaatttgcttggaggaaaaattcctcaatcgattgtaacaatgc |
412 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| || |||||||| ||||||| ||||||| ||||||| |||||||||| |||||| | |||| ||| |
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| T |
37836690 |
ggtatcccagagtttttggcagaatttaccaacctccgcgagttacatcttggtggaaatttgtttggaggcaaaattcctcgatcgatgggaacattgc |
37836789 |
T |
|
| Q |
413 |
gtaatttgttctatgg |
428 |
Q |
| |
|
||||||||||||||| |
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| T |
37836790 |
ataatttgttctatgg |
37836805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 394
Target Start/End: Original strand, 37830698 - 37831067
Alignment:
| Q |
25 |
ccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatggaacaaatttgcacgacatataccatcagagttgggaaacctat |
124 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| ||||||| ||||| ||| | |||||||||||| ||| ||||||| | || | |||||||| |
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|
| T |
37830698 |
ccaattacatcaagtttgggaaattgcacaaatctcgcatacattaatttgtcaagaaacaaatttgcaggactcataccattacagcttggaaaccttg |
37830797 |
T |
|
| Q |
125 |
tgaatattgtgattttggaactttctcacaataacttggaaggtcctctgccacatcagctgtcaaattgtactaaaatgaatcgttttgatgtgggatt |
224 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||| |||||||||||| |||||| | ||| ||||| ||| |||||||| ||||||||||||||||||| |
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| T |
37830798 |
tgaatcttgtgattttggatcttgctcacaataatttggaaggtcctttgccacttaggctttcaaactgtgctaaaatggatcgttttgatgtgggatt |
37830897 |
T |
|
| Q |
225 |
caatttcctaaatggatcactcccatcaagtttgagaagttggacaaacataaccacattgattttaagagaaaattacttcacaggaggtatcccagag |
324 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||| ||||||||||||| | |
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| T |
37830898 |
caatttcttaaatggatcactcccatcaagtttgagaagttgggcacgcataactacattgattttcagagaaaattacttcactggaggtatcccaggg |
37830997 |
T |
|
| Q |
325 |
tttttggctaaatttagcaaccttcgggagttacaacttggtgaaaatttgcttggaggaaaaattcctc |
394 |
Q |
| |
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|||||| | |||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||| |
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|
| T |
37830998 |
tttttgacagaatttagcaaccttcgtgagttacaactaggtggaaatttgcttggaggcgaaattcctc |
37831067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 31 - 428
Target Start/End: Original strand, 36865159 - 36865552
Alignment:
| Q |
31 |
ccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatggaacaaatttgcacgacatataccatcagagttgggaaacctattgaata |
130 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| |||||||| ||||| ||| | |||||||||||| | | ||||||| |||| |||||||||| ||||| |
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|
| T |
36865159 |
ccatcaagtttgggaaattacactaatcttacatacattaatttgtcaagcaacaaatttgcagggctcataccattagagctgggaaaccttgtgaatc |
36865258 |
T |
|
| Q |
131 |
ttgtgattttggaactttctcacaataacttggaaggtcctctgccacatcagctgtcaaattgtactaaaatgaatcgttttgatgtgggattcaattt |
230 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||| | | | |||||||||||||| ||| |||||||||| |||||||||||||| |
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|
| T |
36865259 |
ttgtgattttggatctttctcacaacaacttggaaggtccattgcctctt----tttcaaattgtactaacatggatcgttttgacgtgggattcaattt |
36865354 |
T |
|
| Q |
231 |
cctaaatggatcactcccatcaagtttgagaagttggacaaacataaccacattgattttaagagaaaattacttcacaggaggtatcccagagtttttg |
330 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| | ||||| ||||||| | || ||||| ||| | |||||||| |||||||||| ||||||| |
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|
| T |
36865355 |
cctaaatggatcattcccatcaagtttgataagttggagaggcataagcacattggtcttgagagataatcatttcacagggggtatcccagggtttttg |
36865454 |
T |
|
| Q |
331 |
gctaaatttagcaaccttcgggagttacaacttggtgaaaatttgcttggaggaaaaattcctcaatcgattgtaacaatgcgtaatttgttctatgg |
428 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||||| ||||| | | ||||| |||||||||| ||| || | |||| ||| |||| |||| ||||| |
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|
| T |
36865455 |
gcagaatttagcaaccttagtgagttacaacttggtggaaattcgttcggaggcaaaattcctcgatcaatgggaacattgcataatctgttttatgg |
36865552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 40541159 - 40541253
Alignment:
| Q |
145 |
ctttctcacaataacttggaaggtcctctgccacatcagctgtcaaattgtactaaaatgaatcgttttgatgtgggattcaatttcctaaatgg |
239 |
Q |
| |
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|||||| |||||||||| ||||||||| |||||||||| || ||||| ||||| ||||||| | ||||||||||||||||||||||| ||||| |
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| T |
40541159 |
ctttcttacaataacttagaaggtcctttgccacatcaactttcaaagtgtaccaaaatgagtgtatttgatgtgggattcaatttccttaatgg |
40541253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 45561127 - 45561235
Alignment:
| Q |
150 |
tcacaataacttggaaggtcctctgccacatcagctgtcaaattgtactaaaatgaatcgttttgatgtgggattcaatttcctaaatggatcactccca |
249 |
Q |
| |
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|||||| ||||| ||||| ||| ||||| ||||||||||||||||||||||||| | |||||||||||||| || ||| ||||||| ||| | ||| |
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| T |
45561127 |
tcacaacaacttagaaggacctttgccatttcagctgtcaaattgtactaaaatggacaagtttgatgtgggatttaacttcttaaatggttcattgcca |
45561226 |
T |
|
| Q |
250 |
tcaagtttg |
258 |
Q |
| |
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||||||||| |
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| T |
45561227 |
tcaagtttg |
45561235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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