View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19595_low_7 (Length: 330)
Name: NF19595_low_7
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19595_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 9628233 - 9628540
Alignment:
| Q |
7 |
aggcgattgatccatgaccaggatatctcactggatcgatctccagtctggtttataaaacattgttataaacagagagattagtcacatccttttacat |
106 |
Q |
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| T |
9628233 |
aggcgattgatccatgaacaggatatctcactggatcgatctccagtctggtttataaaacattgttataaacagaga--ttagtaacatccttttacat |
9628330 |
T |
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| Q |
107 |
ttggcaacaacaaatgttaccagataagttatggtaaacattttgtttcaaaatcatatgttgtttcatgtttttggcaatattttgaaattcataatct |
206 |
Q |
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| T |
9628331 |
ttggcaacaacaaatgttaccagataagttatggtaaacattttgtttcaaaatcatatgttgtttcatgtttttggcaacattttgaaattcataatct |
9628430 |
T |
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| Q |
207 |
tggcnnnnnnnnntaaagagatcctaataattgaaaatatagattaattattagacttaccatcccagcaagttgagagacatccatgaaaaaagccaag |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9628431 |
tggc-aaacaaaataaagagatcctaataattgaaaatatagattaattattagacttaccatcccagcaagttgagagacatccatgaaaaaagccaag |
9628529 |
T |
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| Q |
307 |
gccgcaggaac |
317 |
Q |
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|| |||||||| |
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| T |
9628530 |
gctgcaggaac |
9628540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 9614395 - 9614709
Alignment:
| Q |
13 |
ttgatccatgaccaggatatctcactggatcgatctccagtctggtttataaaacattgttataaacagagagattagtcacatccttttacatttggca |
112 |
Q |
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| T |
9614395 |
ttgaaccatgacctggatatctcactggatcgatctccagtctggtttataaaacattgcaatgattagaga--ttagtaacatccttctacatttgcca |
9614492 |
T |
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| Q |
113 |
acaacaaatgttaccagataagttatggtaaacattttg----------tttcaaaatcatatgttgtttcatgtttttggcaatattttgaaattcata |
202 |
Q |
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| T |
9614493 |
accacaaatgttaccagataagttatggtaaacattttgaaacattttgtttcaaaatcatatgttgtttcttgttcttgggaacattttgaaattcata |
9614592 |
T |
|
| Q |
203 |
atcttggcnnnnnnnnntaaagagatcctaataattgaaaatatagattaat---tattagacttaccatcccagcaagttgagagacatccatgaaaaa |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
9614593 |
atcttggcaaacaaaa-taaagagatcctaataattgaaaatatagattaataattattagacctaccaacccagaaagttgagagacatccatgaaaaa |
9614691 |
T |
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| Q |
300 |
agccaaggccgcaggaac |
317 |
Q |
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| T |
9614692 |
tgccaaggctgcaggaac |
9614709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 9648563 - 9648620
Alignment:
| Q |
256 |
attagacttaccatcccagcaagttgagagacatccatgaaaaaagccaaggccgcag |
313 |
Q |
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| T |
9648563 |
attagacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcag |
9648620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 9654580 - 9654637
Alignment:
| Q |
256 |
attagacttaccatcccagcaagttgagagacatccatgaaaaaagccaaggccgcag |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
9654580 |
attagacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcag |
9654637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 9639444 - 9639492
Alignment:
| Q |
259 |
agacttaccatcccagcaagttgagagacatccatgaaaaaagccaagg |
307 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
9639444 |
agacttaccatgccagcaagttgagagacatccatgaaaaaggccaagg |
9639492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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