View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19595_low_8 (Length: 264)
Name: NF19595_low_8
Description: NF19595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19595_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2906018 - 2905774
Alignment:
| Q |
1 |
atacacacaagtgatgatgatgtacattagttgaattgatgcatacatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906018 |
atacacacaagtgatgatgatgtacattagttgaattgatgcatacatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagt |
2905919 |
T |
|
| Q |
101 |
tggnnnnnnnnnnnnnnnnataggcaaatgttagcagtaaattttgttaggaggaggaaaaaatttattaaccgtagagatcgaactttgaacctttttc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2905918 |
tggtttttatttttcttttataggcaaatgttagcagtaaattttgttaggaggaggaaaaaatttattaaccgtagagatcgaattttgaacctttttc |
2905819 |
T |
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| Q |
201 |
ataccattcggctacacgctcagagactattgtaggagttagtcg |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905818 |
ataccattcggctacacgctcagagactattgtaggagttagtcg |
2905774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2853990 - 2853748
Alignment:
| Q |
1 |
atacacacaagtgatgatgatgtacattagttgaattgatgcatacatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853990 |
atacacacaagtgatgatgatgtacattagttgaattgatgcataaatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagt |
2853891 |
T |
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| Q |
101 |
tggnnnnnnnnnnnnnnnnataggcaaatgttagcagtaaattttgttaggaggaggaaaaaatttattaaccgtagagatcgaactttgaacctttttc |
200 |
Q |
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| | ||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
2853890 |
tagtttttatttttcttttataggcaaatgttggtagtaaattttgttaggaggaggaaaaaa--aattaaccatagagatcgaactttgaacctttttc |
2853793 |
T |
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| Q |
201 |
ataccattcggctacacgctcagagactattgtaggagttagtcg |
245 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
2853792 |
ataccattcggctacacgtttggagactattgtaggagttagtcg |
2853748 |
T |
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Back To:
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