View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19596_high_1 (Length: 532)
Name: NF19596_high_1
Description: NF19596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19596_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 37091027 - 37091542
Alignment:
| Q |
1 |
tttttgccgagttactgtagtgaagtatggaggtagctgttaatatttgagaagtaaatcgtgttgaagcaacgatataatagtcttgtggtggttgatc |
100 |
Q |
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| T |
37091027 |
tttttgccgagttactgtagtgaagtatggaggtagctgttaatatttgagaggtaaatcgtgttgaagcaacgatataatagtcttgtggtggttgatc |
37091126 |
T |
|
| Q |
101 |
agcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgtggattccttccacttcaactagtttcatc |
200 |
Q |
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| T |
37091127 |
agcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgtggattccttccacttcaactagtttcatc |
37091226 |
T |
|
| Q |
201 |
ttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtattgcctgccaaataagcaagaaaactgtaat |
300 |
Q |
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| T |
37091227 |
ttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtattgcctgccaaataagcaagaaaactgtaat |
37091326 |
T |
|
| Q |
301 |
tactattgttgagtatgactcaaattcacaaaactcctaattcatcgctggagtttttgtgtgcggttaatttatcagttttctttagaatcggatttgg |
400 |
Q |
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| T |
37091327 |
tactattgttgagtatgactcaaattcacaaaactcctaattcatcgctggagtttttgtgtgcggttaatttatcagttttctttagaatcggatttgg |
37091426 |
T |
|
| Q |
401 |
tgttctaacaaatatccatatcatagaatcaatctagnnnnnnntaaaatgcttgaagttgtttaaatgtaccttgatcaactgtgaatgtgtaagcatt |
500 |
Q |
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| T |
37091427 |
tgttctaacaaatatccatatcatagaatcaatctagaaaaaaataaaatgcttgaagttgtttaaatgtaccttgatcaaccgtgaatgtgtaagcatt |
37091526 |
T |
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| Q |
501 |
agaaccgcgaccattg |
516 |
Q |
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| T |
37091527 |
agaaccgcgaccattg |
37091542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 81 - 277
Target Start/End: Complemental strand, 17347336 - 17347140
Alignment:
| Q |
81 |
tagtcttgtggtggttgatcagcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgtggattcctt |
180 |
Q |
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| T |
17347336 |
tagtcatgtggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcataagtgttttgcagagtgtgacttcctt |
17347237 |
T |
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| Q |
181 |
ccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtattgcctgc |
277 |
Q |
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| T |
17347236 |
ccacctcaacaagctttatcttatgcccttggattctgaaattgattgatgtggtaatccccacatttgatatccggaatctgtaagtcttgcctgc |
17347140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 81 - 261
Target Start/End: Original strand, 17136480 - 17136660
Alignment:
| Q |
81 |
tagtcttgtggtggttgatcagcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgtggattcctt |
180 |
Q |
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| T |
17136480 |
tagtcatgtggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcgtaaatgttttgcacagtgtgacttcctt |
17136579 |
T |
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| Q |
181 |
ccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatc |
261 |
Q |
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| T |
17136580 |
ccacctcaacaagcttcatcttatgcccttggattctgaaattgatggatgtggtaatccccacatttgatatccggaatc |
17136660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 17137070 - 17137116
Alignment:
| Q |
470 |
taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattg |
516 |
Q |
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| T |
17137070 |
taccttgatcaaccgtgaatgtgtaagcattagaaccgcgaccattg |
17137116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 17346723 - 17346677
Alignment:
| Q |
470 |
taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattg |
516 |
Q |
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| T |
17346723 |
taccttgatcaaccgcgaatgtgtaagcattggaaccgcgaccattg |
17346677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 55295970 - 55295900
Alignment:
| Q |
207 |
ccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtattgcctgc |
277 |
Q |
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| T |
55295970 |
ccttggattctgaagttgatggatgttgcgagcccaacatttgatattctgaatctatatgtcttacctgc |
55295900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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