View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19596_high_3 (Length: 314)
Name: NF19596_high_3
Description: NF19596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19596_high_3 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 17136808 - 17137106
Alignment:
| Q |
17 |
aaataatcgcataaaattttgtagctttattatctgtatcgagaaaagcgggtagacgggcatgttagta-ccgcctacacgctaacagttaactaatat |
115 |
Q |
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| T |
17136808 |
aaataatcgcataaaattttgtagctttattatttgtatcgagaaaagcgggtagacgggcatgtcagtagccgcctacatgctagcagttaactaatat |
17136907 |
T |
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| Q |
116 |
cagctggatctaggaacataacctctgaaaagataagggactgtggattcaattccctcaaaaaacatatctaacaaccgatcagtagtcatacaaaaac |
215 |
Q |
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| T |
17136908 |
cagctggatctaggaacataacctctgaaaagataaggtactgtggattcaattccctcgaaaaacatatcgaacaaccgatcagtagtcatacaaaaac |
17137007 |
T |
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| Q |
216 |
aaatcgactacatctgctatggtaaaaaatttcaagtaaacaaatgggttgaaattcatgtataccttgatcaaccgtgaatgtgtaagcattagaacc |
314 |
Q |
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| T |
17137008 |
taatcgactacatctgctatggtaaaaaatttcaagtaaacaaatgggttgaaattcatgtataccttgatcaaccgtgaatgtgtaagcattagaacc |
17137106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 17346783 - 17346687
Alignment:
| Q |
218 |
atcgactacatctgctatggtaaaaaatttcaagtaaacaaatgggttgaaattcatgtataccttgatcaaccgtgaatgtgtaagcattagaacc |
314 |
Q |
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| T |
17346783 |
atcggctacgtctgctatggtatcaaatttcaagtaaacaaattgatctaaattcatgtataccttgatcaaccgcgaatgtgtaagcattggaacc |
17346687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 17346992 - 17346911
Alignment:
| Q |
45 |
attatctgtatcgagaaaagcgggtagacgggcatgttagtaccgcctacacgctaacagttaactaatatcagctggatct |
126 |
Q |
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| T |
17346992 |
attatttgtatcgagaaaagcggatagacgggcatgttagtaccgtctactcgctagtagttaactaatatgagttggatct |
17346911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 37091496 - 37091532
Alignment:
| Q |
278 |
taccttgatcaaccgtgaatgtgtaagcattagaacc |
314 |
Q |
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| T |
37091496 |
taccttgatcaaccgtgaatgtgtaagcattagaacc |
37091532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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