View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19596_low_2 (Length: 506)
Name: NF19596_low_2
Description: NF19596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19596_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Complemental strand, 3806197 - 3805710
Alignment:
| Q |
16 |
cacgaaatgcttattatttgtttccaatcagtttggcaactccttattattaggtctcattttaatatgtgatgagttgtgatagttctgttacataaaa |
115 |
Q |
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| T |
3806197 |
cacgaaatgcttattatttgtttccaatcagtttggcaactccttattattaggtctcattttaatatgtgatgagttgtgatagttctgttgcatgaaa |
3806098 |
T |
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| Q |
116 |
atagggatgcagttttgactttagactttataaaaaagagcacatacttcnnnnnnntaagcagaatctgttctcttcttagtattttttctttctttca |
215 |
Q |
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| T |
3806097 |
atagggatgcagttttgactttagactttataaaaaagagcacatacttcaaaaaaataagcagaatctgttctcttcttagtattttttctttctttca |
3805998 |
T |
|
| Q |
216 |
attatcaattatttgggcaaattgtgctgtgcttttcatacccagaccacaagtgcatgtgttcatagggctcggcttttaaattgcaccgagttcttgc |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
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| T |
3805997 |
cttatcaattatttgggcaaattgttctgtgcttttcatacccagaccacaagtgcatgtgttcatagaatactg-gtttaaattgcaccgagttcttgc |
3805899 |
T |
|
| Q |
316 |
cgaattcgctttcaggatactggttttcacgacacaacaaattctattgtctttggtttgagtattgtattctactgtattttgcaacagtttgaaccat |
415 |
Q |
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| T |
3805898 |
cgaattcgctttcaggatactggttttcacgacacaacaaattctattgtctttggtttgagtattgtattctactgtatttcgcaacagtttgaaccat |
3805799 |
T |
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| Q |
416 |
aaatgacaaaaagtgtcgacacgaagaccagtgtatgctgttcttattgtgaaataatattggtgttcttggttactgcttctttctct |
504 |
Q |
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| T |
3805798 |
aaatgacaaaaagtgtcgacacgaagactagtgtatgctgttcttattgtgaaataatattggtgttcttggttactgcttctttctct |
3805710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 404 - 504
Target Start/End: Original strand, 395142 - 395242
Alignment:
| Q |
404 |
agtttgaaccataaatgacaaaaagtgtcgacacgaagaccagtgtatgctgttcttattgtgaaataatattggtgttcttggttactgcttctttctc |
503 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |
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| T |
395142 |
agtttgaaccataaatgacaaaaagtgtcaacacgaagactcgtgtatgctgttcttattgtgaaatcattttggtgttcttggttgctgcttctttctc |
395241 |
T |
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| Q |
504 |
t |
504 |
Q |
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| T |
395242 |
t |
395242 |
T |
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