View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19596_low_4 (Length: 277)
Name: NF19596_low_4
Description: NF19596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19596_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 15632807 - 15632565
Alignment:
| Q |
19 |
tacataaacccaaaccattaccatcataaattagtcaaatattggataaattactagggcaatacaaaccaagctgcatatactgatataccacagaca- |
117 |
Q |
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| T |
15632807 |
tacataaacccaaaccattaccatcataaattagtcaaatattggataaattactagggcaatacaaaccaagcagcatatactgatataccacagacac |
15632708 |
T |
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| Q |
118 |
-----ggatgcccgactccgaccaatctccctcccttgctctcatcgacgcataccctcaaataactccctctcatgctctcctcgtcctcgacaccctc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15632707 |
agacaggatgcccgactccgaccaatctccctcccttgctctcatcgacgcatagcctcaaataactccctctcatgctctcctcgtcctcgacaccctc |
15632608 |
T |
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| Q |
213 |
ttaatcaagatcttcgatgtctacttctttactgaagcttgta |
255 |
Q |
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| T |
15632607 |
ttaatcaagatcttcgatgtctacttctttactggagcttgta |
15632565 |
T |
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