View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19597_high_5 (Length: 277)
Name: NF19597_high_5
Description: NF19597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19597_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 41985820 - 41986078
Alignment:
| Q |
1 |
cactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtccggtccaaaagcaactgtcctgccaattttatt |
100 |
Q |
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| T |
41985820 |
cactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtccggtccaaaagcaactgtcctgccaattttatt |
41985919 |
T |
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| Q |
101 |
aactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgcaagggatcggcgtccaacactctttgcggcaatggaacagtagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41985920 |
aactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacacgcaagggatcggcgtccaacactctttgcggcaatggaacagtagc |
41986019 |
T |
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| Q |
201 |
ggatggcaggcacagttcaatgtgacaagagcgagaggatttttcccatggcacgtgac |
259 |
Q |
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| T |
41986020 |
ggatggcaggcacagttcaatgtgacaagagcgagaggatttttcccatggtacgtgac |
41986078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 13170609 - 13170405
Alignment:
| Q |
3 |
ctctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtccggtccaaaagcaactgtcctgccaattttattaa |
102 |
Q |
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| T |
13170609 |
ctctcgaccaagaatttcatgtcccctccatccacatattcagtcaataactcaacactatcgcccggtccaaaagcaactgtccgaccaattttattga |
13170510 |
T |
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| Q |
103 |
ctgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgcaagggatcggcgtccaacactctttgcggcaatggaacagtagcgg |
202 |
Q |
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| T |
13170509 |
ctgcacaaaaccgatctttaaacatgcagatatctaaaaagttcgtttacatgcaggggataggcgtccaacgctcttcgcggcaatggaacagtagtgg |
13170410 |
T |
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| Q |
203 |
atggc |
207 |
Q |
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||||| |
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| T |
13170409 |
atggc |
13170405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 44688712 - 44688554
Alignment:
| Q |
1 |
cactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtcc---ggtccaaaagcaactgtcctgccaatttt |
97 |
Q |
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||||||||||||||||||| |||||||||||||| |||| || ||||| | | |||||| ||||| | |||| |||||| ||||| |||||||| |
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| T |
44688712 |
cactctctaccaggaattttatgtcccctccatcaacatgtttagccacttgttgcacactaaagtccgctgctccataagcaaatgtccgaccaatttt |
44688613 |
T |
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| Q |
98 |
attaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgc |
156 |
Q |
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| T |
44688612 |
attgactatataaaacagctctttaaaaacacatatgtctacaaagtgtgttgacatgc |
44688554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 18991394 - 18991562
Alignment:
| Q |
5 |
ctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtccggtccaaaagcaactgtcctgccaattttattaact |
104 |
Q |
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|||||||| ||||||||| |||||||||| |||||||||||||| |||||| |||||||||||| |||||| ||||||||||| |||||||||||||| |
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| T |
18991394 |
ctctaccaagaatttcatatcccctccattcacatattcagccactaactcaacactatagtccaatccaaacgcaactgtcctaccaattttattaacc |
18991493 |
T |
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| Q |
105 |
gcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgcaagggatcggcgtccaa |
173 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
18991494 |
gcataaaaccgctctttaaacacgcagatgtctagaaagtacgttgacatgcatgggatcaacgtccaa |
18991562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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