View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19597_low_2 (Length: 549)
Name: NF19597_low_2
Description: NF19597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19597_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 335 - 473
Target Start/End: Complemental strand, 45883520 - 45883382
Alignment:
| Q |
335 |
caaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaactcgatg |
434 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| | ||| ||||||||||||||||||||||||||||||||| |
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| T |
45883520 |
caaatttgcgataatttgttgaaagcagcttatgatcctcgtatttctggtgtgtatcttcaaattgacaatttaaattgcggttgggctaaactcgatg |
45883421 |
T |
|
| Q |
435 |
aaattcgaagacaaatctcaaatttccagaaatcaggta |
473 |
Q |
| |
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||||||||||||| |||| ||||||| |||||||||| |
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| T |
45883420 |
aaattcgaagacagatcttaaatttcagaaaatcaggta |
45883382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 324 - 489
Target Start/End: Complemental strand, 56209839 - 56209674
Alignment:
| Q |
324 |
tatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggc |
423 |
Q |
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||||| |||||||| ||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||| |||| | | ||||||||| |||||||| |
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| T |
56209839 |
tatctctgcctcaattttgcgataatatgttgaaagcagcttatgatcatcgtatttctgccgtatatcttcgtattgatactttaaattgtggttgggc |
56209740 |
T |
|
| Q |
424 |
taaactcgatgaaattcgaagacaaatctcaaatttccagaaatcaggtaaaattgttgtggctta |
489 |
Q |
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| T |
56209739 |
taaactcgatgaaattcgaaggcaaatcttaaatttcagaaaatctggtaaacttgttgtggctta |
56209674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 452
Target Start/End: Complemental strand, 45863577 - 45863455
Alignment:
| Q |
330 |
tgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaact |
429 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| | ||||||||||| |||||||||||| |
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| T |
45863577 |
tgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagc |
45863478 |
T |
|
| Q |
430 |
cgatgaaattcgaagacaaatct |
452 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
45863477 |
tgatgaaattcgaagacaaatct |
45863455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 320 - 533
Target Start/End: Original strand, 47292357 - 47292569
Alignment:
| Q |
320 |
gtattatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggtt |
419 |
Q |
| |
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|||| |||| |||||| ||||||||||||||| |||||||| || ||||||| |||||||||||| || | |||| ||||| | ||||||||| |||| |
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| T |
47292357 |
gtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgtggtt |
47292456 |
T |
|
| Q |
420 |
gggctaaactcgatgaaattcgaagacaaatctcaaatttccagaaatcaggtaaaattgttgtggcttacgtccctacaattctaccaaaagaatatta |
519 |
Q |
| |
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||||||||||| |||||||||||| ||||| |||||| |||||||| ||| || |||| ||||| |||||| |||| | |||||||||||| |
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| T |
47292457 |
gggctaaactc-atgaaattcgaaaggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgtccctgcaataggaggaaaagaatatta |
47292555 |
T |
|
| Q |
520 |
tattgcctgtgcat |
533 |
Q |
| |
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||||| ||||||| |
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| T |
47292556 |
cattgcttgtgcat |
47292569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 460
Target Start/End: Original strand, 54303285 - 54303411
Alignment:
| Q |
334 |
tcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaactcgat |
433 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||||||||||| || ||||||||| |||| || ||||| || ||||||| |||||| ||| |
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| T |
54303285 |
tcaaatttgcgataatttgttgaaagccatgtatgatcctcgtatttatgttgtatatctcaatatccaaaatttgaacactggttggggtaaactagat |
54303384 |
T |
|
| Q |
434 |
gaaattcgaagacaaatctcaaatttc |
460 |
Q |
| |
|
||||||||||| ||||||| ||||||| |
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|
| T |
54303385 |
gaaattcgaaggcaaatcttaaatttc |
54303411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 56210007 - 56209939
Alignment:
| Q |
145 |
ttatcccaccggtgacttcaatttcgaaccccctaccggcttcaacaaatttcttgttaagctcaagac |
213 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| |
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| T |
56210007 |
ttatcccactggtgacttcaatttcgtgccccataccggcttcaaaaaatttctcgttaagctcaagac |
56209939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 110 - 519
Target Start/End: Original strand, 35851337 - 35851732
Alignment:
| Q |
110 |
tcttactcatcctcatcttcttccaatgtcaaagattatcccaccggtgacttcaatttcgaaccccctaccggcttcaacaaatttcttgttaagctca |
209 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||| |
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| T |
35851337 |
tcttactcatccttatcttcttccaatgccaaagattatcccactggtgacttcaatttcgagccc--------attcaacaaatttcttgttaggctct |
35851428 |
T |
|
| Q |
210 |
agacgacactggctttaccttcggaatttgttcaacacg---gaagtgtattgaaaatcaatttgcaaggtaggatatccgacgagctctcccgtacatt |
306 |
Q |
| |
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|||| | | |||||||| | ||| | ||||| | | |||||||||||||||||||||||||||||| ||||||||| ||||| | || ||| |
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| T |
35851429 |
agaccatggtagctttaccattggagcgttttcaatatggaagaagtgtattgaaaatcaatttgcaaggtaagatatccgatcagctcacggctatatt |
35851528 |
T |
|
| Q |
307 |
atgtgatcccaatgtattatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaat |
406 |
Q |
| |
|
||| || | |||||||||||| || || ||||||||||||||||||||||||| |||| ||||||| || || |||||| |||||||| |
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| T |
35851529 |
atgcaattcaaatgtattatctctgtctgaaatttgcgataatttcttgaaagccgctt---------gtatttccgccgtctatcttcatattcactca |
35851619 |
T |
|
| Q |
407 |
ttaaattgcggttgggctaaactcgatgaaattcgaagacaaatctcaaatttccagaaatcaggtaaaattgttgtggcttacgtccctacaattctac |
506 |
Q |
| |
|
||| |||| || ||||| |||| ||||||||||||| |||||| |||||||| | ||||||||||||| ||||||||||| |||| | | |||| || |
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|
| T |
35851620 |
ttagattgtggctgggcagaacttgatgaaattcgaaaacaaatttcaaattttaaaaaatcaggtaaaacggttgtggcttatgtcctttcgattcaac |
35851719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 320 - 519
Target Start/End: Complemental strand, 35803645 - 35803446
Alignment:
| Q |
320 |
gtattatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggtt |
419 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||| || | |||||| |||||||| ||| |||| || | |
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|
| T |
35803645 |
gtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttcatattcactcattagattgtggct |
35803546 |
T |
|
| Q |
420 |
gggctaaactcgatgaaattcgaagacaaatctcaaatttccagaaatcaggtaaaattgttgtggcttacgtccctacaattctaccaaaagaatatta |
519 |
Q |
| |
|
|||| ||| | |||||||||||||||||||| |||||||| | ||||||||||| | ||||||||||| |||||| |||||| ||||||||||||||| |
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|
| T |
35803545 |
gggcaaaatttgatgaaattcgaagacaaatttcaaattttaaaaaatcaggtaagacggttgtggcttatgtcccttcaattcaaccaaaagaatatta |
35803446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 323 - 519
Target Start/End: Original strand, 10520215 - 10520411
Alignment:
| Q |
323 |
ttatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttggg |
422 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||| |||||| |||| || |||||| ||| ||||||| |
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|
| T |
10520215 |
ttatctcttcctcaaatttgcggtaatttcttgaaagcagcatatgatccttgtatttccgctgtttatcttcatatcgaccatttaagttggggttggg |
10520314 |
T |
|
| Q |
423 |
ctaaactcgatgaaattcgaagacaaatctcaaatttccagaaatcaggtaaaattgttgtggcttacgtccctacaattctaccaaaagaatatta |
519 |
Q |
| |
|
||||||| ||||| |||| ||| ||||| | ||||||| ||||| || ||||| ||||||||||| |||||| |||||| ||||| ||||||||| |
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|
| T |
10520315 |
ctaaacttgatgagattcaaaggcaaattttaaatttcagaaaatcggggaaaatggttgtggcttatgtcccttcaattcaaccaacagaatatta |
10520411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 10520085 - 10520158
Alignment:
| Q |
125 |
tcttcttccaatgtcaaagattatcccaccggtgacttcaatttcgaaccccctaccggcttcaacaaatttct |
198 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||| |
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|
| T |
10520085 |
tcttcttccaataccgaagattaccccaccggtgacttcaatttcgaacccctcatcggctacaacaaatttct |
10520158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 329 - 489
Target Start/End: Complemental strand, 7973743 - 7973583
Alignment:
| Q |
329 |
ttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaac |
428 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||| || |||| | |||||| ||| |||| ||||||| |
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|
| T |
7973743 |
ttgcctcaaatttgcgagaatttgttgaaagccgcttatgatcctcgtatttctgctgtgtatgttgttatttatcctttaaaatgcagttgagctaaac |
7973644 |
T |
|
| Q |
429 |
tcgatgaaattcgaagacaaatctcaaatttccagaaatcaggtaaaattgttgtggctta |
489 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||| |||||||||||| || |||| ||||| |
|
|
| T |
7973643 |
tcgatgaaattcaaagggaaatcataaatttcagaaaatcaggtaaacttattgttgctta |
7973583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 24348401 - 24348545
Alignment:
| Q |
332 |
cctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaactcg |
431 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| ||||||||||| ||||||| || ||||| ||||| | | |||| |||| || |||| |||| | | |
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|
| T |
24348401 |
cctcaaatatgcgagaattttttgaaagcagcctatgatcctcgaatttctggggtctatctccatattgatagtttagattgtgggtggggtaaagtag |
24348500 |
T |
|
| Q |
432 |
atgaaattcgaagacaaatctcaaatttccagaaatcaggtaaaa |
476 |
Q |
| |
|
| ||||||||||| || |||| |||||| | ||||||||||||| |
|
|
| T |
24348501 |
aagaaattcgaaggcacatcttgaatttcaaaaaatcaggtaaaa |
24348545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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