View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19597_low_3 (Length: 523)
Name: NF19597_low_3
Description: NF19597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19597_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 29608337 - 29607851
Alignment:
| Q |
17 |
atatttctggctccatcgatggtactgaccttcgctacatatagaaccttatcaaactattcgattgaaccatatgaagaatgagttactttgagattag |
116 |
Q |
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| T |
29608337 |
atatttctggctccatcgatggtactgaccttcgctacatatagaaccttatcaaactattcgattgaaccatatgaagaatgagttactttgagatt-g |
29608239 |
T |
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| Q |
117 |
aacaataaataagtattgtcttacatgacaccgatacacatg-----tataaatgaaagaataagacttgttttattttttggtactgaccttcactaca |
211 |
Q |
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| T |
29608238 |
aacaataaataagtattgtcttacatgacaccgatacacatgacttgtataaatgaaagaataagacttgttttattttttggtactgaccttcactaca |
29608139 |
T |
|
| Q |
212 |
tatcaatgattgaaccaaatcaaaacaactcatccttcatatttgttggtgtcagacacgtacacatgtcagccactggacacgtcttggatcagaagtg |
311 |
Q |
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| T |
29608138 |
tatcaatgattgaaccaaatcaaaacaactcatccttcatatttgttggtg-----------------tcagccactggacacgtcttcgatcagaagtg |
29608056 |
T |
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| Q |
312 |
tcagtggtactggtactgaacatagaactattagattctagatttttatgctccctttaaattgcaattgcagctacacgattgtgggttgtgagcttaa |
411 |
Q |
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| T |
29608055 |
tcagtggtactggtactgaacatagaactattagattctagatttttatgctccctttaaattgcaattgcagctacacgattgtgggttgtgagcttaa |
29607956 |
T |
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| Q |
412 |
aatcatgtcaatgggggaaatagtctaatagtatacaatattatgggcccacaattgattcatattgcagttatatttaactttttactaagtctttctt |
511 |
Q |
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| T |
29607955 |
aatcatgtcaatgggggaaatagtctaatagtatacaatattatgggccaacaattgattcatattgcagttatatttaactttttagtaagtttttctt |
29607856 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 28136270 - 28136314
Alignment:
| Q |
273 |
acacatgtcagccactggacacgtcttggatcagaagtgtcagtg |
317 |
Q |
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||||||||||| ||| |||||||||| ||||||||||||||||| |
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| T |
28136270 |
acacatgtcagacaccagacacgtcttcgatcagaagtgtcagtg |
28136314 |
T |
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