View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19597_low_4 (Length: 344)
Name: NF19597_low_4
Description: NF19597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19597_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 172 - 328
Target Start/End: Original strand, 19229155 - 19229311
Alignment:
| Q |
172 |
atgatttctttgtatctttatgaattcactgtctttaacatgaattccataattaatttaaactctccaatttcctttttcggatttgtggaaattcact |
271 |
Q |
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| T |
19229155 |
atgatttctttgtatctttatgaattcactgtctttaacatgaattccataattaatttaaactctccaatttcctttttcggatttgtggaaattcact |
19229254 |
T |
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| Q |
272 |
tttcatatatttattgtgctacacaccagctctggaggagatattgtgctaaagctt |
328 |
Q |
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| T |
19229255 |
tttcatatatttattgtgctacacaccagctctggaggagatattgtgctaaagctt |
19229311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 19229008 - 19229082
Alignment:
| Q |
25 |
ttgaaaagaaagcttagattcacaattcttattgttttatatacagataaaattcttgtcgtaatcgtcgttaga |
99 |
Q |
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| T |
19229008 |
ttgaaaagaaagcttagattcacaattcttattgttttatatacagataaaattcttgtcgtaatcgttgttaga |
19229082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 19229009 - 19228980
Alignment:
| Q |
1 |
aatcatcacataccacagctattgttgaaa |
30 |
Q |
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| T |
19229009 |
aatcatcacataccacagctattgttgaaa |
19228980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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