View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_11 (Length: 449)
Name: NF19598_high_11
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 31079548 - 31079278
Alignment:
| Q |
4 |
gtaagatagcgtgtgcattttctttaaaatcattcatgatccttcactcaacaacttaagcttcagctttaaatttaatcaaccaaatggaaacacctct |
103 |
Q |
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| T |
31079548 |
gtaagatagcgtgtgcattgtctttaaaatcattcatggtccttcactcaccaacttaaacttaagctttaaatttaatcaaccaaatggaaacacctct |
31079449 |
T |
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| Q |
104 |
taatgacttgaaagaaaaggttatcactatatattggcatcaaggaggtaagaagagattaaaatctatagaattataaatttcttgatttggtgcctgt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31079448 |
taatgacttgaaagaaaaggttatcactatatattggcatcaaggaggt---aagagactaaaatctatagaattataaatttcttgatttggtgcctgt |
31079352 |
T |
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| Q |
204 |
gattgaatttttacaccagacagnnnnnnnnnnnnnnnggttaatacaccagacaggttttactttattattatgta |
280 |
Q |
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| T |
31079351 |
gattgaatttttacaccagacag---ttttctttttttggttaatacaccagacaggttttactttattattatgta |
31079278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 9164656 - 9164484
Alignment:
| Q |
9 |
atagcgtgtgcattttctttaaaatcattcatgatccttcactcaacaacttaagcttcagctttaaatttaatcaaccaaatggaaacacctcttaatg |
108 |
Q |
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| T |
9164656 |
atagtgtgtgcattgtctataaaatcattcatggtccttcactcagcaacttaagcttcagctttaaatttaatcaaccaaatgaaaacaccacttaatg |
9164557 |
T |
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| Q |
109 |
acttgaaagaaaaggttatcactatatattggcatcaaggaggtaagaagagattaaaatctatagaattataaatttct |
188 |
Q |
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| T |
9164556 |
acttgaaagaaaaggttatcac----tattggcatcaaggaggt---aagagactaaaatctatagaattataaatttct |
9164484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 31079279 - 31079208
Alignment:
| Q |
360 |
taaaatctgctaaccactggatttcccaggaataatgtacaagaaaactagagtctaaaccatgttaccaac |
431 |
Q |
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| T |
31079279 |
taaaatctgctaaccactggatttcctaggaataatgtacaagaaaactagagtctaaaccatgttaccaac |
31079208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 431
Target Start/End: Complemental strand, 10672027 - 10671910
Alignment:
| Q |
313 |
catacaaatggttctaaaggtgttcgaaaattgagtgttatcatttttaaaatctgctaaccactggatttcccaggaataatgtacaagaaaactagag |
412 |
Q |
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| T |
10672027 |
catacaaatggttctcaaggtgtttgaaaattgagtgttatcatttttcgaatcagccaaccaccggattt-aaaggaatgatgtacaagaaaactagag |
10671929 |
T |
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| Q |
413 |
tctaaaccatgttaccaac |
431 |
Q |
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| T |
10671928 |
tctacaccaagttaccaac |
10671910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 9164470 - 9164433
Alignment:
| Q |
248 |
tacaccagacaggttttactttattattatgtagaaag |
285 |
Q |
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| T |
9164470 |
tacaccagacaggttttaatttattattatgtagaaag |
9164433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 10672109 - 10672060
Alignment:
| Q |
4 |
gtaagatagcgtgtgcattttctttaaaatcattcatgatccttcactca |
53 |
Q |
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| T |
10672109 |
gtaagatagcttgtgcattctctataaaaccattcatgttccttcactca |
10672060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 23262224 - 23262159
Alignment:
| Q |
64 |
cttcagctttaaatttaatcaaccaaatggaaacacctcttaatgacttgaaagaaaaggttatca |
129 |
Q |
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|||||| |||||| ||||||||||| | ||| ||||||||||||||||| ||||||||||||| |
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| T |
23262224 |
cttcagttttaaacttaatcaaccattttcgaactcctcttaatgacttgaaggaaaaggttatca |
23262159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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