View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_high_12 (Length: 449)

Name: NF19598_high_12
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_high_12
NF19598_high_12
[»] chr4 (2 HSPs)
chr4 (16-435)||(16841184-16841603)
chr4 (155-433)||(24216181-24216468)
[»] chr5 (21 HSPs)
chr5 (141-435)||(37698220-37698523)
chr5 (141-411)||(37437152-37437431)
chr5 (147-411)||(37534557-37534824)
chr5 (147-411)||(37713075-37713348)
chr5 (155-411)||(37595781-37596049)
chr5 (148-411)||(37641329-37641604)
chr5 (159-411)||(37704119-37704380)
chr5 (147-318)||(37391377-37391548)
chr5 (198-318)||(37380810-37380930)
chr5 (155-410)||(37430209-37430473)
chr5 (155-318)||(37441499-37441659)
chr5 (222-328)||(37825456-37825562)
chr5 (148-296)||(37411743-37411891)
chr5 (332-411)||(37391585-37391664)
chr5 (198-318)||(37399290-37399410)
chr5 (35-104)||(37704379-37704445)
chr5 (35-107)||(37437442-37437511)
chr5 (331-411)||(37399450-37399530)
chr5 (331-411)||(37825346-37825426)
chr5 (37-107)||(37698554-37698625)
chr5 (352-396)||(26451943-26451987)
[»] chr3 (2 HSPs)
chr3 (147-315)||(14554615-14554780)
chr3 (343-411)||(14554483-14554551)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 16841184 - 16841603
Alignment:
Q  16 ataagagaataccccacaacttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagtagaaagnnn 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  16841184 ataagagaataccccacaacttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagtagaaagaaa 16841283  T
Q  116 nnnnnctactnnnnnnnnnnnnnnnatcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgc 215  Q
         |||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16841284 aaaaactactgagaagagagagagaatcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgc 16841383  T
Q  216 tgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16841384 tgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 16841483  T
Q  316 atctcaacttgatatttgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16841484 atctcaacttgatatttgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaa 16841583  T
Q  416 tcagattacgtggttggttt 435  Q
    ||||||||||||||||||||    
T  16841584 tcagattacgtggttggttt 16841603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 433
Target Start/End: Original strand, 24216181 - 24216468
Alignment:
Q  155 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 254  Q
    ||||| ||||| |||||||||||| |  |||||  |||  || ||||||||||| |  || || |||||||||| ||||||||  ||||||  |||||||    
T  24216181 ctctatatgggttccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattct 24216280  T
Q  255 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttgatatt---------tgttcctctacttc 345  Q
    ||||||| |||||||| ||||| |||||||| ||||| |||||||||  |||||||||||||||| |||  ||||||         |||||| ||  ||     
T  24216281 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtctatgtgttccacttttta 24216380  T
Q  346 tttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaatcagattacgtggttggt 433  Q
    ||||| |||  |||| |||||||| ||| | ||||||||| |||||||||| |||| ||||||||||   ||| |||||||| |||||    
T  24216381 tttcaggacggaatcctggaaaaatggtgcagattgttgcgagtgggatggggtcatgtgtgacactaggtcaaattacgtgattggt 24216468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 141 - 435
Target Start/End: Complemental strand, 37698523 - 37698220
Alignment:
Q  141 atcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcaca 240  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||| |||||  || || |||||||||| ||||||||  |    
T  37698523 atcggtgtaagttgctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttccta 37698424  T
Q  241 cactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttgatatt--------- 331  Q
    |||  | ||||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||| || |||||||| ||||||| |||||||             
T  37698423 cacactctcattatgcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtctaga 37698324  T
Q  332 tgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaatcagattacgtggttg 431  Q
    |||||||||  ||||| || |||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| || ||||||||| |||    
T  37698323 tgttcctctttttcttccaggacagaatcttggaaaaacaatacagattgttgcaagtgggatggtgtcacgtgtgacactgagtcggattacgtgattg 37698224  T
Q  432 gttt 435  Q
    ||||    
T  37698223 gttt 37698220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 141 - 411
Target Start/End: Complemental strand, 37437431 - 37437152
Alignment:
Q  141 atcggagtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcaca 240  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   || || ||||||||||||||||| | ||    
T  37437431 atcggtgtaagttgctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactaccca 37437332  T
Q  241 cactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttga---------tatt 331  Q
    |||||| ||||| |||||||| ||||||| |||||| || ||||| ||||||||||| |||  | ||||||||||||||||||   |         |  |    
T  37437331 cactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaacccaatccgtactttggt 37437232  T
Q  332 tgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    |||| ||||  ||||||||||||| |||||||| ||||| |||| ||||||||  ||||||||||||||||||| |||||    
T  37437231 tgtttctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacac 37437152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 147 - 411
Target Start/End: Complemental strand, 37534824 - 37534557
Alignment:
Q  147 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 246  Q
    ||||||| ||||||||||| ||||||||||||   ||||||| |||| || ||||||| |||||  || || || ||||||| ||||||||  |||||||    
T  37534824 gtaagtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacacttt 37534725  T
Q  247 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttgatatt---tgttcctctact 343  Q
     ||| | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||| |||||||||||||||  || ||    |||| |||  |    
T  37534724 ctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctcaactctattttgcgcgttcttctttt 37534625  T
Q  344 tctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    |||||||||||| |||||||| ||||| |||| ||||||||  ||||||||||||||||||| |||||    
T  37534624 tctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacac 37534557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 147 - 411
Target Start/End: Complemental strand, 37713348 - 37713075
Alignment:
Q  147 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 246  Q
    ||||||| ||||||||||| ||||||||||||   ||||||| |||| || ||||||| ||||   || || |||||||||| |||||||| ||||||||    
T  37713348 gtaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacacttt 37713249  T
Q  247 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttga---------tatttgttcc 337  Q
     ||| | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||   |         |  |||||||    
T  37713248 ctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacccaatccgtactttggttgttcc 37713149  T
Q  338 tctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    |||  ||||||||||||| |||||||| ||||| |||| ||||||||  ||||||||||||||||||| |||||    
T  37713148 tctttttctttcaagacagaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacac 37713075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 155 - 411
Target Start/End: Complemental strand, 37596049 - 37595781
Alignment:
Q  155 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctt--tgt-gctgctgcttactcactttacttcacacactttgtcat 251  Q
    ||||||||||| ||||||||||||   ||||||| |||| || ||||||| |||||  ||| | ||||||||||||| ||||||||  ||||||| ||||    
T  37596049 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcat 37595950  T
Q  252 tctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttga---------tatttgttcctctac 342  Q
    | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||   |         |  ||||||||||      
T  37595949 tgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacccaatccgtactttggttgttcctcttt 37595850  T
Q  343 ttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||  ||||||||||||||||||| |||||    
T  37595849 ttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacac 37595781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 148 - 411
Target Start/End: Complemental strand, 37641604 - 37641329
Alignment:
Q  148 taagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttg 247  Q
    |||||| ||||||||||| ||||||||||||   ||||||| |||| || ||||||| || ||  || || || ||||||| ||||||||  |||||||     
T  37641604 taagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttc 37641505  T
Q  248 tcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttga------------tatttgtt 335  Q
    ||| | |||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||| |||  ||            || ||||     
T  37641504 tcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaaccggacgatattttgtctagttgtc 37641405  T
Q  336 cctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    |||||  ||||||||||||| ||||||||||||||  ||| ||||||||  ||||||||||||||||||| |||||    
T  37641404 cctctttttctttcaagacagaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcgacac 37641329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 159 - 411
Target Start/End: Complemental strand, 37704380 - 37704119
Alignment:
Q  159 aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa 258  Q
    ||||| |||||||||||||| | ||||||| |||| |  |||||||||||||  |  ||||||||||||| ||||||||  ||||||| ||||| ||||     
T  37704380 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 37704281  T
Q  259 ccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaa---------cttgatatttgttcctctacttctttc 349  Q
    ||||||||| ||||| || |||||||| |||||| |||||||||||||||||||||||||| ||         ||   ||| ||||  |||  ||||||     
T  37704280 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgtttgtctttttctttt 37704181  T
Q  350 aagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    |||||| |||||||||||| ||| || ||||||||| ||||||||||||||||||| |||||    
T  37704180 aagacagaatcttggaaaaccggcacagattgttgcgagtgggatggtgtcacgtgcgacac 37704119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 318
Target Start/End: Original strand, 37391377 - 37391548
Alignment:
Q  147 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 246  Q
    ||||||||||||||||||||||||| |||||| | ||||||| |||| || ||||||||||| |  || || |||||||||| ||||||||  | ||| |    
T  37391377 gtaagttgctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactct 37391476  T
Q  247 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatc 318  Q
     ||||| |||||||  ||||| |||||||| ||| |||| |||||||||||||||| |||||||||||||||    
T  37391477 ctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatc 37391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 198 - 318
Target Start/End: Original strand, 37380810 - 37380930
Alignment:
Q  198 ttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactc 297  Q
    |||||||||||||  || || |||||||||| |||||||| |||||||| ||||| |||||||||||||| |  ||||| ||||||||||||||||||||    
T  37380810 ttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactc 37380909  T
Q  298 attttctgtcaacacttcatc 318  Q
    ||||||| |||||||||||||    
T  37380910 attttctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 410
Target Start/End: Complemental strand, 37430473 - 37430209
Alignment:
Q  155 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 254  Q
    ||||||||||||||||||| | || | || |||| | ||||| |||||||||||||  || ||||||| ||||  ||||||||  | || || ||| | |    
T  37430473 ctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgt 37430374  T
Q  255 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctcaacttgatatt---------tgttcctctacttc 345  Q
    |||| || |||||||| ||||| |||||||| ||||| || ||||||| | |||||||||||||||||| || | ||         |||||||||  |||    
T  37430373 gcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctcaacctggtttttggtctcactgttcctctttttc 37430274  T
Q  346 tttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgaca 410  Q
    |||||||||| |||||||||||| ||| || ||||| ||| ||||||||||||||||||| ||||    
T  37430273 tttcaagacagaatcttggaaaaccggcacagattgctgcgagtgggatggtgtcacgtgcgaca 37430209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 318
Target Start/End: Complemental strand, 37441659 - 37441499
Alignment:
Q  155 ctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattct 254  Q
    ||||||||||| |||||||||||| | ||||||| |||| || ||||| |||||||  || ||||||||||||| ||||||||  | ||||| ||| | |    
T  37441659 ctctaaatggg-tccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgt 37441561  T
Q  255 gcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatc 318  Q
    | ||| ||||||||| |||||| |||||||| |||||||||||  |||| ||||||||||||||    
T  37441560 gaaacaaacatgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatc 37441499  T

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Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 37825562 - 37825456
Alignment:
Q  222 ttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 321  Q
    ||||||| ||||||||  ||||||| ||| | |||||| ||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||| |    
T  37825562 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaa 37825463  T
Q  322 acttgat 328  Q
    || ||||    
T  37825462 acctgat 37825456  T

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Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 296
Target Start/End: Original strand, 37411743 - 37411891
Alignment:
Q  148 taagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttg 247  Q
    ||||||||||||||||||||||| |||| || | ||| | | |||| || |||||||||||||  |||||||| ||||||| ||||||||  |||| ||     
T  37411743 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttc 37411842  T
Q  248 tcattctgcaaccaacatgacagctctgctttgttacatttcaaaaact 296  Q
    ||||| |||||| | |||||||||| ||| |||||||| ||||| ||||    
T  37411843 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 37411891  T

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Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 411
Target Start/End: Original strand, 37391585 - 37391664
Alignment:
Q  332 tgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    |||||||||  ||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||    
T  37391585 tgttcctctttttctttcaagacagaatcttggaaaaacagtacaaattgttgcaagtgggatggtgtcacgtgcgacac 37391664  T

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Target: chr5; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 318
Target Start/End: Original strand, 37399290 - 37399410
Alignment:
Q  198 ttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactc 297  Q
    |||||||||||||  || || || ||||||| ||||||||| ||||||| ||| | |||||||| ||||||| |||||| |||||||| |||||||| ||    
T  37399290 ttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattc 37399389  T
Q  298 attttctgtcaacacttcatc 318  Q
    ||||| |||  ||||||||||    
T  37399390 attttttgttgacacttcatc 37399410  T

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Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 37704445 - 37704379
Alignment:
Q  35 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 104  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  37704445 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 37704379  T

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Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 37437511 - 37437442
Alignment:
Q  35 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaagta 107  Q
    |||||||||| |||||||||||||||||||||   ||||||||||| |||||||||| |||||||||||||||    
T  37437511 cttagtttcaagttatgtttcctatataaata---gaggctaatcatttggtatatcctaaatcatcaaagta 37437442  T

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Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 411
Target Start/End: Original strand, 37399450 - 37399530
Alignment:
Q  331 ttgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    ||||||||||  ||||||||||||| |||||||| ||||| |||| ||||||||  ||||||||||||||||||| |||||    
T  37399450 ttgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacac 37399530  T

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Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 411
Target Start/End: Complemental strand, 37825426 - 37825346
Alignment:
Q  331 ttgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    ||||||||||  ||||||||||||| |||||||| ||||| |||| ||||||||  ||||||||||||||||||| |||||    
T  37825426 ttgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacac 37825346  T

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Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 37698625 - 37698554
Alignment:
Q  37 tagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatat----cgtaaatcatcaaagta 107  Q
    ||||||||||||||||||||||||||||||   ||||||||||| |||||||||    |||||||||||||||||    
T  37698625 tagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctacgtaaatcatcaaagta 37698554  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 26451987 - 26451943
Alignment:
Q  352 gacaaaatcttggaaaaacggtacggattgttgcaagtgggatgg 396  Q
    ||||||||| ||||||||||||||| ||||||||  |||||||||    
T  26451987 gacaaaatcatggaaaaacggtacgaattgttgcttgtgggatgg 26451943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 147 - 315
Target Start/End: Complemental strand, 14554780 - 14554615
Alignment:
Q  147 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 246  Q
    ||||||| ||||||||||| |||||||||||| | ||||||| |||| || ||||||| ||||   |  || |||||||||| ||||||||  | |||||    
T  14554780 gtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttct---tattgttgcttactcattttacttcctatacttt 14554684  T
Q  247 gtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 315  Q
     ||||| |||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||    
T  14554683 ctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttc 14554615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 14554551 - 14554483
Alignment:
Q  343 ttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacac 411  Q
    ||||||||||||| |||||||||||||  |||| ||||||||| ||||||||||||||||||| |||||    
T  14554551 ttctttcaagacagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcgacac 14554483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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