View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_15 (Length: 433)
Name: NF19598_high_15
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 54166460 - 54166050
Alignment:
| Q |
1 |
ctcaatttccaacttgcgtggggaaggcaattacaagtgcgtttatgaaagctgattatgcttttgcagattccagctcgcttgatatctcctctggcac |
100 |
Q |
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| T |
54166460 |
ctcaatttccaacttgcgtggggaaggcaattacaagtgcgtttatgaaagctgattatgcttttgcagattccagctcgcttgatatctcctctggcac |
54166361 |
T |
|
| Q |
101 |
caccgctttaactgcacttgtatttgggaggtaatgaccttgcattatgattccatgattcttttcattaattttagcaagtttcagttgccttcagatt |
200 |
Q |
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| T |
54166360 |
caccgctttaactgcacttgtatttgggaggtaatgaccttgcattatgattccatgattcttttcattaattttagcaagtttcagttgccttcagatt |
54166261 |
T |
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| Q |
201 |
ttattggttgtttgttagatccctattatttttaagtgggtgttagaacacggccgctctgtcaatgtttggaaacaatataatggcatttgcttcttca |
300 |
Q |
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| T |
54166260 |
ttattggttgtttgttagatccctattatttttaagtgggtgttagaacacggccgctctgtcaatgtttggaaacaatataatggcatttgcttcttca |
54166161 |
T |
|
| Q |
301 |
accgtaatttatccgggaaaaacataagaatctgggatactgtttttgtctcatctcattggagatggaagagagaagttgtggaaagaaaacttatatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54166160 |
accgtaatttatccgggaaaaacataagaatctgggatagtgtttttgtctcatctcattggagatggaagagagaagttgtggaaagaaaacttatatg |
54166061 |
T |
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| Q |
401 |
gattgtgttct |
411 |
Q |
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| T |
54166060 |
gattgtgttct |
54166050 |
T |
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