View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_high_17 (Length: 407)

Name: NF19598_high_17
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_high_17
NF19598_high_17
[»] chr6 (3 HSPs)
chr6 (15-299)||(27598050-27598333)
chr6 (326-356)||(27598615-27598645)
chr6 (130-231)||(13587603-13587704)
[»] chr8 (2 HSPs)
chr8 (58-277)||(29264488-29264710)
chr8 (198-228)||(6863073-6863103)
[»] chr4 (1 HSPs)
chr4 (120-243)||(21001364-21001486)
[»] chr3 (2 HSPs)
chr3 (180-240)||(13774452-13774512)
chr3 (160-215)||(40210411-40210466)
[»] chr5 (2 HSPs)
chr5 (180-259)||(8073669-8073748)
chr5 (182-231)||(40558778-40558827)
[»] chr1 (1 HSPs)
chr1 (180-231)||(41625547-41625598)
[»] chr7 (2 HSPs)
chr7 (180-240)||(8227531-8227591)
chr7 (180-240)||(47873002-47873062)
[»] chr2 (1 HSPs)
chr2 (157-221)||(1940417-1940481)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 27598050 - 27598333
Alignment:
Q  15 tcaaaaacacattaagtggctgtagttaaaattatcnnnnnnntaacaaatgtagtattgttgcagctgcagcacatattagtatagggccaagtctatg 114  Q
    ||||||||||||||||||| ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27598050 tcaaaaacacattaagtggttgtagttaaaattatcaaaactataacaaatgtactattgttgcagctgcagcacatattagtatagggccaagtctatg 27598149  T
Q  115 gtgcggggacttaagtcttgcaccatgcacaacgcgggttttaccattggatcaataaggatcggtattaaattaaatgaaatatggtgagatttattga 214  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  27598150 gtgcggggacttaagtcttgcaccatgcacaacgtggtttttaccattggatcaataaggctcagtattaaattaaatgaaatatggtgagatttattga 27598249  T
Q  215 tccaatggtggaaaatatgcttgtgcatgaaataatactattttgttagtgcacataagacaaagtattcatatagaagtggtaa 299  Q
    ||||||||||| ||||| ||||||||| |||  |||||||||||| |  ||||||| |||| |||| || |||||||||| ||||    
T  27598250 tccaatggtggcaaataagcttgtgcacgaagcaatactattttgcttttgcacattagac-aagtcttgatatagaagtagtaa 27598333  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 356
Target Start/End: Original strand, 27598615 - 27598645
Alignment:
Q  326 caacatggaaattcttgtcctcctcaaagcc 356  Q
    |||||||||||||||||||||||||||||||    
T  27598615 caacatggaaattcttgtcctcctcaaagcc 27598645  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 13587603 - 13587704
Alignment:
Q  130 tcttgcaccatgcacaacgcgggttttaccattggatcaataaggatcggtattaaattaaatgaaatatggtgagatttattgatccaatggtggaaaa 229  Q
    |||||||||||||| || |  | || |||||||||||||||||   ||  ||||||||| |||||||||||  |||||||| |||| ||||| | |||||    
T  13587603 tcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatgaaatatgacgagatttaatgattcaatgctagaaaa 13587702  T
Q  230 ta 231  Q
    ||    
T  13587703 ta 13587704  T

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Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 58 - 277
Target Start/End: Original strand, 29264488 - 29264710
Alignment:
Q  58 taacaaatgtagtattgttgcagctgcagcacatattagtatagggccaagtctatggtgcg---gggacttaagtcttgcaccatgcacaacgcgggtt 154  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    |||||||| |||||||||||||||||| | || ||    
T  29264488 taacaaatgtagtattgctgcagttgcagcacatattagtatagggccaagtctatggtgcacacgggacttacgtcttgcaccatgcacaatgtggttt 29264587  T
Q  155 ttaccattggatcaataaggatcggtattaaattaaatgaaatatggtgagatttattgatccaatggtggaaaatatgcttgtgcatgaaataatacta 254  Q
    |||||| ||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||| |||||  |||||||| |||  |||||||    
T  29264588 ttaccactggatcaataaggctcaatattaaattaaattaaatatggtgagatttattgatccaatggtggcaaataaacttgtgcacgaagcaatacta 29264687  T
Q  255 ttttgttagtgcacataagacaa 277  Q
    ||||| | |||||||| ||||||    
T  29264688 ttttgcttgtgcacattagacaa 29264710  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 6863103 - 6863073
Alignment:
Q  198 atggtgagatttattgatccaatggtggaaa 228  Q
    |||||||||||||||||||||||||||||||    
T  6863103 atggtgagatttattgatccaatggtggaaa 6863073  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 21001486 - 21001364
Alignment:
Q  120 gggacttaagtcttgcaccatgcacaacgcgggttttaccattggatcaataaggatcgg-tattaaattaaatgaaatatggtgagatttattgatcca 218  Q
    ||||| || |||||||||||| ||||| |  | |||||||| |||||||| |||  || | |||||||||||||| |||||| ||||||||| |||||||    
T  21001486 gggacatatgtcttgcaccattcacaaggttgtttttaccaatggatcaacaag--tcagctattaaattaaatgtaatatgatgagatttaatgatcca 21001389  T
Q  219 atggtggaaaatatgcttgtgcatg 243  Q
    | ||||||||| | |||||||||||    
T  21001388 acggtggaaaacaagcttgtgcatg 21001364  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 13774512 - 13774452
Alignment:
Q  180 tattaaattaaatgaaatatggtgagatttattgatccaatggtggaaaatatgcttgtgc 240  Q
    ||||||||||||||||||||||||||||| | | ||||||| |||||||||| ||||||||    
T  13774512 tattaaattaaatgaaatatggtgagattaaattatccaatagtggaaaataagcttgtgc 13774452  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 40210466 - 40210411
Alignment:
Q  160 attggatcaataaggatcggtattaaattaaatgaaatatggtgagatttattgat 215  Q
    ||||||||||||||  ||| ||||||||||||||||||||| ||||||||| ||||    
T  40210466 attggatcaataagtctcgttattaaattaaatgaaatatgatgagatttaatgat 40210411  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 8073669 - 8073748
Alignment:
Q  180 tattaaattaaatgaaatatggtgagatttattgatccaatggtggaaaatatgcttgtgcatgaaataatactattttg 259  Q
    ||||||||||||||||||||| ||||||||| |||| |||| || |||||||  ||||||||||   |||||||||||||    
T  8073669 tattaaattaaatgaaatatgatgagatttaatgattcaatagttgaaaataaacttgtgcatggtgtaatactattttg 8073748  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 40558778 - 40558827
Alignment:
Q  182 ttaaattaaatgaaatatggtgagatttattgatccaatggtggaaaata 231  Q
    ||||||||||||||||||| || ||| || ||||||||||||| ||||||    
T  40558778 ttaaattaaatgaaatatgatgtgatctaatgatccaatggtgaaaaata 40558827  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 41625547 - 41625598
Alignment:
Q  180 tattaaattaaatgaaatatggtgagatttattgatccaatggtggaaaata 231  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||| |||||||    
T  41625547 tattaaattaaataaaatatgatgagattcattgatccaatggtagaaaata 41625598  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 8227531 - 8227591
Alignment:
Q  180 tattaaattaaatgaaatatggtgagatttattgatccaatggtggaaaatatgcttgtgc 240  Q
    |||| |||||||||||||||| |||||||||  ||| ||||||||||||||| | ||||||    
T  8227531 tatttaattaaatgaaatatgatgagatttaacgatacaatggtggaaaataagtttgtgc 8227591  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 47873002 - 47873062
Alignment:
Q  180 tattaaattaaatgaaatatggtgagatttattgatccaatggtggaaaatatgcttgtgc 240  Q
    ||||||||||||||||||||| ||||||||| |||| |||  |||||||||| | ||||||    
T  47873002 tattaaattaaatgaaatatgatgagatttaatgatacaacagtggaaaataagtttgtgc 47873062  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 1940417 - 1940481
Alignment:
Q  157 accattggatcaataaggatcggtattaaattaaatgaaatatggtgagatttattgatccaatg 221  Q
    |||||||||||||||||  ||||  ||| || || ||| ||||||||||| ||||||||||||||    
T  1940417 accattggatcaataagtctcggacttagatcaagtgagatatggtgagacttattgatccaatg 1940481  T

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