View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_2 (Length: 584)
Name: NF19598_high_2
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 9935726 - 9935172
Alignment:
| Q |
19 |
cggaaaaatctcttctttcctagaagggtctccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgt |
118 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935726 |
cggaaaaatctcctctttcctagaagggtctccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgt |
9935627 |
T |
|
| Q |
119 |
tgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtcaatgtcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935626 |
tgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtcaatgtcaa |
9935527 |
T |
|
| Q |
219 |
caacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcctaggtct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
9935526 |
caacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccattgcaccaagtccaccagaagttaaccactgcctaggtct |
9935427 |
T |
|
| Q |
319 |
cttgtatttgtaaaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatcttaattgca |
418 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935426 |
cttgtatttgtagaattgagcagcccacatttgatgttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatcttaattgca |
9935327 |
T |
|
| Q |
419 |
tattgaggcgaaatggcattctcaaatctcttaaaagcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatcaagtttcc |
518 |
Q |
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| T |
9935326 |
tattgaggcgaaatggcattctcaaatctcttaaaagcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatcaagtttcc |
9935227 |
T |
|
| Q |
519 |
ccttgattcctttactctccaaaactctattaagaccttccaacgccaccttcat |
573 |
Q |
| |
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| T |
9935226 |
ccttgattcctttactctccaaaactctattaagaccttccaacgccaccttcat |
9935172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 101 - 370
Target Start/End: Complemental strand, 3473068 - 3472799
Alignment:
| Q |
101 |
acaaccattcccaaatgttgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactac |
200 |
Q |
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|||||||| ||||| ||||||||||||||||||| |||||| || || | ||| ||| | | |||||||| || || ||||||||||||| |||||| | |
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| T |
3473068 |
acaaccatacccaagtgttgattattcaacaacaatatcttaacagggagattctccaccttgatagtagccaattcctgaacattcatcataaaacttc |
3472969 |
T |
|
| Q |
201 |
catctccgtcaatgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagt |
300 |
Q |
| |
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|||| || || |||||||| || || || | || || |||| || || || || ||||| || ||||| || |||||||| ||||| ||| | || || |
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| T |
3472968 |
catcaccatcgatgtcaaccacaatagcgtcgggattggcaacagcagctcccatggcagccggcaatccaaatcccatagcgccaagaccagcagatgt |
3472869 |
T |
|
| Q |
301 |
taaccactgcctaggtctcttgtatttgtaaaattgagcagcccacatttgatgttgtccaacaccagta |
370 |
Q |
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| T |
3472868 |
caaccactgccttggtctcttgtacctataaaactgagcagcccacatctgatgttgtccaacaccagta |
3472799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 9924827 - 9924712
Alignment:
| Q |
19 |
cggaaaaatctcttctttcctagaagggtctccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgt |
118 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||||||||||||||||| | || ||| ||||||||||||| |||| ||| |||||||||||||||| |
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| T |
9924827 |
cggaaaaatctcgtcttgcctacaagggtctccaagataagtatgacctttgttggactggtagaatctatcctcccactgagtaaccattcccaaatgt |
9924728 |
T |
|
| Q |
119 |
tgattattcaacaaca |
134 |
Q |
| |
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| |||||||||||||| |
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| T |
9924727 |
taattattcaacaaca |
9924712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 39 - 573
Target Start/End: Complemental strand, 45477652 - 45477118
Alignment:
| Q |
39 |
tagaagggtctccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgttgattattcaacaacattat |
138 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||| | |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| || |
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| T |
45477652 |
tagaagggtcaccaagataagtatgagctctatttgccttgtagaatctatcctcccattgaacaaccatacccaaatgttgattattcaacaacaggat |
45477553 |
T |
|
| Q |
139 |
cttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtcaatgtcaacaacgatggcattagggtta |
238 |
Q |
| |
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||| ||||||| ||| || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||||| || || |||| ||||||| |
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| T |
45477552 |
cttaaccggaagattctctactcttatagtagctaactcttgaacgttcatcataaaactaccatccccgtcaatatcaacgacaattgcatcagggtta |
45477453 |
T |
|
| Q |
239 |
gcaattgcggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcctaggtctcttgtatttgtaaaattgag |
338 |
Q |
| |
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|||| || ||||| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| |
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| T |
45477452 |
gcaacagcagcaccgatagcagcaggtaatccaaaacccatggcaccaagtccaccagaagttaaccactgcctaggtctcttatacttgtaaaactgag |
45477353 |
T |
|
| Q |
339 |
cagcccacatttgatgttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatcttaattgcatattgaggcgaaatggcatt |
438 |
Q |
| |
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||| |||||||||||| ||||||||||||||| |||||||||| |||||||| || ||||| ||||||| || ||| ||||| ||||||||||| |||| |
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| T |
45477352 |
cagaccacatttgatgctgtccaacaccagtactaacaatagcgtcaccattcgtcaactcatcaagcacctgaatagcatactgaggcgaaatagcatc |
45477253 |
T |
|
| Q |
439 |
ctcaaatctcttaaaagcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatcaagtttccccttgattcctttactctcc |
538 |
Q |
| |
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||||||| |||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45477252 |
ctcaaatgtcttaaaaccaagaggaaattttaacttctgcacattcaactcctgcctccatgcctcaaaatcaagcttccccttgattcctttactctcc |
45477153 |
T |
|
| Q |
539 |
aaaactctattaagaccttccaacgccaccttcat |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45477152 |
aaaactctattaagaccttccaacgccaccttcat |
45477118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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