View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_high_20 (Length: 402)

Name: NF19598_high_20
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_high_20
NF19598_high_20
[»] chr3 (7 HSPs)
chr3 (46-386)||(11610442-11610782)
chr3 (199-250)||(11252045-11252096)
chr3 (197-244)||(14829776-14829823)
chr3 (199-248)||(33359826-33359875)
chr3 (204-249)||(34185056-34185101)
chr3 (205-249)||(1509637-1509681)
chr3 (196-248)||(20503536-20503588)
[»] chr7 (12 HSPs)
chr7 (207-272)||(18215144-18215210)
chr7 (204-250)||(30813866-30813912)
chr7 (204-250)||(5409775-5409821)
chr7 (291-349)||(27944999-27945057)
chr7 (204-250)||(29763133-29763179)
chr7 (291-349)||(32094064-32094122)
chr7 (291-344)||(5235949-5236002)
chr7 (205-250)||(13770765-13770810)
chr7 (291-348)||(26733263-26733320)
chr7 (204-248)||(1401094-1401138)
chr7 (312-348)||(6028584-6028620)
chr7 (200-248)||(40287302-40287350)
[»] chr1 (14 HSPs)
chr1 (254-349)||(5927346-5927441)
chr1 (291-340)||(9709787-9709836)
chr1 (204-279)||(2218267-2218343)
chr1 (200-346)||(48040414-48040560)
chr1 (204-248)||(5927284-5927328)
chr1 (204-244)||(30359440-30359480)
chr1 (204-244)||(31694643-31694683)
chr1 (291-342)||(2896164-2896215)
chr1 (204-250)||(6427544-6427590)
chr1 (255-326)||(46348390-46348461)
chr1 (204-250)||(46940752-46940798)
chr1 (204-249)||(29144324-29144369)
chr1 (204-249)||(42359393-42359438)
chr1 (204-248)||(47989579-47989623)
[»] chr4 (10 HSPs)
chr4 (204-248)||(11596301-11596345)
chr4 (193-250)||(24343582-24343639)
chr4 (198-279)||(37203292-37203373)
chr4 (193-248)||(715538-715593)
chr4 (193-248)||(752864-752919)
chr4 (204-250)||(23292930-23292976)
chr4 (205-250)||(3712458-3712503)
chr4 (204-249)||(18513179-18513224)
chr4 (204-248)||(12708213-12708257)
chr4 (267-332)||(21539886-21539951)
[»] chr8 (6 HSPs)
chr8 (254-342)||(22197748-22197836)
chr8 (291-348)||(4673468-4673525)
chr8 (205-250)||(22197676-22197721)
chr8 (200-250)||(5813661-5813711)
chr8 (291-348)||(24362245-24362302)
chr8 (193-250)||(29510226-29510283)
[»] chr6 (11 HSPs)
chr6 (291-342)||(23130522-23130573)
chr6 (204-348)||(7938075-7938215)
chr6 (267-342)||(34447377-34447452)
chr6 (292-340)||(18803555-18803603)
chr6 (291-349)||(8365562-8365620)
chr6 (291-349)||(9658838-9658895)
chr6 (204-249)||(7248439-7248484)
chr6 (291-332)||(34073390-34073431)
chr6 (204-236)||(5569832-5569864)
chr6 (204-252)||(9025449-9025497)
chr6 (204-248)||(32511610-32511654)
[»] chr5 (9 HSPs)
chr5 (291-340)||(15410491-15410540)
chr5 (291-342)||(17123013-17123064)
chr5 (291-334)||(25979012-25979055)
chr5 (291-349)||(19820437-19820495)
chr5 (291-349)||(22013372-22013430)
chr5 (204-250)||(35017112-35017158)
chr5 (199-248)||(19820327-19820376)
chr5 (193-250)||(32766865-32766922)
chr5 (255-332)||(21191063-21191140)
[»] chr2 (9 HSPs)
chr2 (255-349)||(20539681-20539775)
chr2 (255-336)||(20473293-20473374)
chr2 (190-250)||(35056948-35057008)
chr2 (291-349)||(6940213-6940271)
chr2 (204-250)||(37419823-37419869)
chr2 (199-248)||(11223792-11223841)
chr2 (204-248)||(2438663-2438707)
chr2 (291-347)||(21624226-21624282)
chr2 (198-250)||(26769591-26769643)
[»] scaffold0053 (2 HSPs)
scaffold0053 (255-348)||(8757-8850)
scaffold0053 (198-250)||(8867-8919)
[»] scaffold0793 (1 HSPs)
scaffold0793 (193-248)||(4814-4869)
[»] scaffold0003 (1 HSPs)
scaffold0003 (196-250)||(241674-241728)
[»] scaffold0086 (1 HSPs)
scaffold0086 (206-250)||(3008-3052)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 46 - 386
Target Start/End: Complemental strand, 11610782 - 11610442
Alignment:
Q  46 gtgtcagtatcatcgatagaacatcgacacatatagttacgctcgaacacttcaacttaattataactaatgtctacgtgtctctaagtgtctctattag 145  Q
    |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11610782 gtgtcagtgtcatcgatagaacatcaacacatatagttacgctcaaacacttcaacttaattataactaatgtctacgtgtctctaagtgtctctgttag 11610683  T
Q  146 atgtatatgtttgtgtcggtgcttcatcgtactgcaaagtagtatactaataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcgg 245  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  11610682 atgtctatgtttgtgtcggtgcttcattgtactgcaaagtagtaaactaataatctatgaagcacggacactcctcagattaggcgtgtcccgatgtcgg 11610583  T
Q  246 acacgacttgacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatc 345  Q
    ||||||||||||||||||||||||||| |||||| |||       |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |    
T  11610582 acacgacttgacacttgtaactacactgaattatgtgatttttttaaattattagcggtgttggcgtgtcagtatctgtgttgtgtctgatgtccgtacc 11610483  T
Q  346 cgtgatagttaataatatatttgattgacatacctgccagt 386  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  11610482 cgtgatagttaataatagatttgattgacatacctgccagt 11610442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 11252096 - 11252045
Alignment:
Q  199 tctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||| ||||||| |||||||||| |||| |||||||||||||| ||||||||    
T  11252096 tctatgaagcacagacactcctcggattaggcgtgttccgatgccggacacg 11252045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 14829823 - 14829776
Alignment:
Q  197 aatctacgaagcacggacactcctcagatttggcgtgttccgatgtcg 244  Q
    ||||||||||||||||||| |||||||||| ||||||| ||| |||||    
T  14829823 aatctacgaagcacggacattcctcagattaggcgtgtcccggtgtcg 14829776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 33359875 - 33359826
Alignment:
Q  199 tctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||||||||||||||||  ||| | ||||| |||||||||||||    
T  33359875 tctacgaagcacggacactcctccaattagacgtgtcccgatgtcggaca 33359826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 34185056 - 34185101
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacac 249  Q
    |||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  34185056 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 1509681 - 1509637
Alignment:
Q  205 aagcacggacactcctcagatttggcgtgttccgatgtcggacac 249  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  1509681 aagcacggacactcctccgattaggcgtgtaccggtgtcggacac 1509637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 20503588 - 20503536
Alignment:
Q  196 taatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    ||||||| |||||||||||||||||| |||| ||||||| ||| |||| ||||    
T  20503588 taatctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagaca 20503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 18215144 - 18215210
Alignment:
Q  207 gcacggacactcctcagatttggcgtgttccgatgtcggacacgac-ttgacacttgtaactacact 272  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||   ||||||||||||||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcggacacgacaccgacacttgtaactacact 18215210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 30813912 - 30813866
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||||    
T  30813912 gaagcacggacactcctcggattaggcgtgttctgatgtcggacacg 30813866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 5409775 - 5409821
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  5409775 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 5409821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 27945057 - 27944999
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    |||||||||| ||||| ||| |||||||||| |||| ||||| | ||||||||||||||    
T  27945057 aaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtg 27944999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 29763133 - 29763179
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||| |||| ||||||| | |||||||||||||    
T  29763133 gaagcacggacactcctcggattaggcgtgtcctgatgtcggacacg 29763179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 32094064 - 32094122
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    ||||||||||  |||||||||||| ||||| ||||| ||||||  ||||||||||||||    
T  32094064 aaattattagttgtgttggcatgttagtgtttgtgtcgtgtcttgtgtccgtatccgtg 32094122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 5236002 - 5235949
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtat 344  Q
    |||||||||||||||| | | ||||||||||||||| |||||  ||||||||||    
T  5236002 aaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtccaatgtccgtat 5235949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 13770810 - 13770765
Alignment:
Q  205 aagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||| || |||| ||||||||||| |||||||||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacg 13770765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 26733320 - 26733263
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgt 348  Q
    |||||||||||||||| | | |||||||||| |||| ||||||| |||| ||||||||    
T  26733320 aaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtctggtgtcggtatccgt 26733263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 1401138 - 1401094
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||| |||||||||||||||| || |||| |||||||||||||    
T  1401138 gaagcatggacactcctcagattaggtgtgtcccgatgtcggaca 1401094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 6028620 - 6028584
Alignment:
Q  312 tgtcagtgtctgtgttgtgtctgatgtccgtatccgt 348  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  6028620 tgtcagtgtctgtgtcgtgtctgatgtccgtgtccgt 6028584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 40287302 - 40287350
Alignment:
Q  200 ctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||||||||||||||| |||| ||| ||| ||| |||||||||    
T  40287302 ctacgaagcacggacactcctcggattaggcatgtcccggtgtcggaca 40287350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 5927346 - 5927441
Alignment:
Q  254 tgacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    |||||||||||| |||| ||||||||||||       ||||||||||| ||||| || |||||||||| |||| ||||| | ||||||||||||||    
T  5927346 tgacacttgtaattacattaaattatatgattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtg 5927441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 9709836 - 9709787
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtcc 340  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  9709836 aaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtctgatgtcc 9709787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 2218343 - 2218267
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacgac-ttgacacttgtaactacactaaattat 279  Q
    ||||||||||||||||||||||| ||||||| |   |||||||||||||   ||||||||||| |||||||||||||    
T  2218343 gaagcacggacactcctcagattaggcgtgtcctagtgtcggacacgacaccgacacttgtaattacactaaattat 2218267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 48040414 - 48040560
Alignment:
Q  200 ctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacgacttgacacttgtaactacactaaattatatga-nnnnnnnaaattatt 298  Q
    ||||||||||||||||||||||  ||| ||||||| ||  |||||||||||||  ||||||||||  ||||||||| ||| |||        ||||||||    
T  48040414 ctacgaagcacggacactcctccaattaggcgtgtcccagtgtcggacacgac-cgacacttgtatttacactaaaatatgtgacctttttcaaattatt 48040512  T
Q  299 agcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatcc 346  Q
    | | |||| ||| |||||||||| |||| ||||| | |||||||||||    
T  48040513 atctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatcc 48040560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 5927284 - 5927328
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  5927284 gaagcacggacactcctcagattaggcatgtttcgatgtcggaca 5927328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 30359480 - 30359440
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcg 244  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  30359480 gaagcacggacactcctcagatttggcgtgtcccgttgtcg 30359440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 31694643 - 31694683
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcg 244  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  31694643 gaagcacggacactcctcagattaggcgtgttccggtgtcg 31694683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 2896164 - 2896215
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgt 342  Q
    |||||||||||||||| ||| |||||||||| |||||||||| | |||||||    
T  2896164 aaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgt 2896215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 6427590 - 6427544
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    ||||||||||||||| ||||||| ||||||| ||| |||||||||||    
T  6427590 gaagcacggacactcatcagattaggcgtgtcccggtgtcggacacg 6427544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 46348390 - 46348461
Alignment:
Q  255 gacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgt 326  Q
    ||||||||||| |||||||||||||||||       ||||||||||| |||| ||| |||||||||| ||||    
T  46348390 gacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgt 46348461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 46940752 - 46940798
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||    
T  46940752 gaagcacgaacactcctcggattaggcgtgttccggtgtcggacacg 46940798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 29144324 - 29144369
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacac 249  Q
    ||||||||||||||| || |||| ||||||||||| ||||||||||    
T  29144324 gaagcacggacactcttcggattaggcgtgttccggtgtcggacac 29144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 42359393 - 42359438
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacac 249  Q
    |||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  42359393 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 42359438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 47989623 - 47989579
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||||||||||| |||| ||||||| |||||||| ||||    
T  47989623 gaagcacggacactcctcggattaggcgtgtcccgatgtcagaca 47989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 11596301 - 11596345
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  11596301 gaagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11596345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 24343639 - 24343582
Alignment:
Q  193 taataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||| ||||| ||||||||||||||||||||| | ||||||| ||| |||||||||||    
T  24343639 taatgatctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacg 24343582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 37203373 - 37203292
Alignment:
Q  198 atctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacgacttgacacttgtaactacactaaattat 279  Q
    ||||| |||||||||||||| ||| |||| | ||||| ||| |||||||| ||||   |||||||||| |||||||||||||    
T  37203373 atctatgaagcacggacacttctcggattagacgtgtcccggtgtcggacccgacactacacttgtaattacactaaattat 37203292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 715538 - 715593
Alignment:
Q  193 taataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||| |||||||||||||||||| |||| ||||||| ||  |||||||||    
T  715538 taataatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 752864 - 752919
Alignment:
Q  193 taataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||| |||||||||||||||||| |||| ||||||| ||  |||||||||    
T  752864 taataatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 23292930 - 23292976
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  23292930 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 23292976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 3712458 - 3712503
Alignment:
Q  205 aagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||    
T  3712458 aagcacggacactcctcagattagccgtgtcccggtgtcggacacg 3712503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 18513179 - 18513224
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacac 249  Q
    ||||||||||||||||||||||| ||||||| | | ||||||||||    
T  18513179 gaagcacggacactcctcagattaggcgtgtcctggtgtcggacac 18513224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 12708257 - 12708213
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    ||||||||||| |||||| |||| |||||||||||||||| ||||    
T  12708257 gaagcacggacgctcctcggattaggcgtgttccgatgtccgaca 12708213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 21539886 - 21539951
Alignment:
Q  267 tacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtc 332  Q
    |||||||||||||||||       |||||||||  ||||| ||||||||||||||| |||||||||    
T  21539886 tacactaaattatatgattttcttaaattattaatggtgtcggcatgtcagtgtctatgttgtgtc 21539951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 22197748 - 22197836
Alignment:
Q  254 tgacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgt 342  Q
    |||||||||||| ||||||||||||| |||       ||||||||||| |||||||| ||| ||||||||||| ||||| | |||||||    
T  22197748 tgacacttgtaattacactaaattatgtgaatttttcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtgtccgt 22197836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 4673468 - 4673525
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgt 348  Q
    ||||||||| | |||| ||| ||||||||||||||| ||||| |||||||||||||||    
T  4673468 aaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtatccgt 4673525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 22197676 - 22197721
Alignment:
Q  205 aagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||    
T  22197676 aagcacggacactcctcagattaggcgtgatccggtgtcggacacg 22197721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 5813711 - 5813661
Alignment:
Q  200 ctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    ||||||||||||||||||||||  ||| ||||||| ||| |||||||||||    
T  5813711 ctacgaagcacggacactcctccaattaggcgtgtcccggtgtcggacacg 5813661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 24362245 - 24362302
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgt 348  Q
    |||||||||||||||| ||| |||| |||||||||| || || | |||||||||||||    
T  24362245 aaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtatccgt 24362302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 29510226 - 29510283
Alignment:
Q  193 taataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||| ||| |||||||||||||||||| |||| || |||| ||| |||||||||||    
T  29510226 taataacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 23130522 - 23130573
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgt 342  Q
    |||||||||||  ||| |||||||||||||| ||||||||||||||||||||    
T  23130522 aaattattagctatgtcggcatgtcagtgtcagtgttgtgtctgatgtccgt 23130573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 348
Target Start/End: Complemental strand, 7938215 - 7938075
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacgacttgacacttgtaactacactaaattatatgannnnnnnaaattattagcgg 303  Q
    |||||||||||||||||| |||  |||||||  || ||||||||||     ||||||| ||| |||||||||||||||||       ||||||||||| |    
T  7938215 gaagcacggacactcctcggatcaggcgtgtctcggtgtcggacacc----gacacttataattacactaaattatatgattttttcaaattattagctg 7938120  T
Q  304 tgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgt 348  Q
    ||| ||| ||||||||||  ||| ||||| | ||||||| |||||    
T  7938119 tgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgt 7938075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 34447377 - 34447452
Alignment:
Q  267 tacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgt 342  Q
    |||||||||||||||||       ||||||||| |||||||||| ||||| |||||||||| |||||| |||||||    
T  34447377 tacactaaattatatgattttatcaaattattaacggtgttggcgtgtcattgtctgtgttatgtctggtgtccgt 34447452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 18803555 - 18803603
Alignment:
Q  292 aattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtcc 340  Q
    ||||||||||||||| ||||||||||||| ||||| ||||| |||||||    
T  18803555 aattattagcggtgtcggcatgtcagtgtttgtgtcgtgtccgatgtcc 18803603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 8365562 - 8365620
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    ||||||||||  |||| ||| |||||||||| |||| ||||||| ||||||||||||||    
T  8365562 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtg 8365620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 9658895 - 9658838
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    |||||||||||||||| ||| |||||||||| |||| ||||||| |||| |||||||||    
T  9658895 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctg-tgtctgtatccgtg 9658838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 7248484 - 7248439
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacac 249  Q
    |||||||||||||||||| |||||| ||||| ||| ||||||||||    
T  7248484 gaagcacggacactcctcggatttgacgtgtcccggtgtcggacac 7248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 34073390 - 34073431
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtc 332  Q
    |||||||||||| |||||||||||||||||| |||| |||||    
T  34073390 aaattattagcgatgttggcatgtcagtgtccgtgtcgtgtc 34073431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 5569864 - 5569832
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttc 236  Q
    ||||||||||||||||||||||| |||||||||    
T  5569864 gaagcacggacactcctcagattaggcgtgttc 5569832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 9025449 - 9025497
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacgac 252  Q
    |||||||||||||| ||| |||| ||||||| ||| |||||||||||||    
T  9025449 gaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgac 9025497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 32511610 - 32511654
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||||    
T  32511610 gaagcacggacactcctccgattaggcgtgctccgatgtcagaca 32511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 15410491 - 15410540
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtcc 340  Q
    |||||||||||||||| ||| |||||||||| |||| |||||||||||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctgatgtcc 15410540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 17123064 - 17123013
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgt 342  Q
    |||||||||||||||||||| ||||||||||  |||| |||| |||||||||    
T  17123064 aaattattagcggtgttggcgtgtcagtgtccatgttatgtccgatgtccgt 17123013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 25979012 - 25979055
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctg 334  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||    
T  25979012 aaatttttagccgtgttgacatgtcagtgtctgtgttgtgtctg 25979055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 19820437 - 19820495
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    |||||||||||||||| ||  |||||||||| |||| ||||| | ||||||||||||||    
T  19820437 aaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtg 19820495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 22013430 - 22013372
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    ||||||||||| |||| ||| |||||||||| |||| ||||| | ||||||||||||||    
T  22013430 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtg 22013372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35017158 - 35017112
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||| |||| ||||||| ||||||| |||||||    
T  35017158 gaagcacggacactcctcggattaggcgtgtcccgatgttggacacg 35017112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 19820327 - 19820376
Alignment:
Q  199 tctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||| |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  19820327 tctatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 32766865 - 32766922
Alignment:
Q  193 taataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||| ||||||||||||||||||||||| | ||| | | | |||||||||||    
T  32766865 taataatctatgaagcacggacactcctcagattagacgtatcctggtgtcggacacg 32766922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 21191063 - 21191140
Alignment:
Q  255 gacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtc 332  Q
    ||||||||||| |||||| |||||| |||       ||||||||||| |||| |||||||||||||| |||| |||||    
T  21191063 gacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtc 21191140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 349
Target Start/End: Original strand, 20539681 - 20539775
Alignment:
Q  255 gacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    ||||||||||| |||||||||||||||||       ||||||||||| |||| | | |||||||||| |||| |||||   ||||||||||||||    
T  20539681 gacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtg 20539775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 20473374 - 20473293
Alignment:
Q  255 gacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgat 336  Q
    ||||||||||| |||||| ||||||||||       ||||||||||  |||| ||||||||||||||||||| | |||||||    
T  20473374 gacacttgtaattacactgaattatatgagttttttaaattattagttgtgtcggcatgtcagtgtctgtgtcgagtctgat 20473293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 35057008 - 35056948
Alignment:
Q  190 tactaataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||| |||| ||| ||||||||||||||||||||||| |||||||| |  |||||||||||    
T  35057008 tacttataagctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacg 35056948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 6940271 - 6940213
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgtg 349  Q
    ||||||||||| |||| ||| |||||||||| |||| || | |||||||||||||||||    
T  6940271 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtatttgatgtccgtatccgtg 6940213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 37419869 - 37419823
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  37419869 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 37419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 11223792 - 11223841
Alignment:
Q  199 tctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||| ||||||||||||||||||||||| ||||||| ||| |||| ||||    
T  11223792 tctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 2438663 - 2438707
Alignment:
Q  204 gaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  2438663 gaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 2438707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 21624282 - 21624226
Alignment:
Q  291 aaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccg 347  Q
    ||||||||||| |||| ||| ||||||||||||||| ||||  | ||||||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccg 21624226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 26769643 - 26769591
Alignment:
Q  198 atctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    ||||| |||||||||||||||||| |||| ||||||| ||  |||||||||||    
T  26769643 atctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacg 26769591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 8850 - 8757
Alignment:
Q  255 gacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtgttgtgtctgatgtccgtatccgt 348  Q
    ||||||||||| |||||||||| ||||||       ||||||||||| |||| ||| |||||||||| |||| ||||| | ||||||| |||||    
T  8850 gacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgt 8757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 8919 - 8867
Alignment:
Q  198 atctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    ||||| |||||||||| |||||||||||| |||||||  || |||||||||||    
T  8919 atctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacg 8867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 4814 - 4869
Alignment:
Q  193 taataatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 248  Q
    |||||||||| |||||||||||||||||| |||| ||||||| ||  |||||||||    
T  4814 taataatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 241728 - 241674
Alignment:
Q  196 taatctacgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    ||||||| |||||||||||||| ||| |||| ||||||| ||| |||||||||||    
T  241728 taatctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 241674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 3052 - 3008
Alignment:
Q  206 agcacggacactcctcagatttggcgtgttccgatgtcggacacg 250  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||    
T  3052 agcacggacactcctcggattaggcgtgttccggtgtcgaacacg 3008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University