View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_36 (Length: 288)
Name: NF19598_high_36
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 28 - 275
Target Start/End: Complemental strand, 15639462 - 15639195
Alignment:
| Q |
28 |
ccgtttattttttgcagtttttcatagctctgctcatttgcccgttagacatattttatcgcccaactcgcttctgcttcatccgtgttattcgtaacat |
127 |
Q |
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| T |
15639462 |
ccgtttattttttgcagtttttcatagctctgctcatttgcccgttagacatattttatcgcccaactcgcttctgcttcatccgtgttattcgtaacat |
15639363 |
T |
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| Q |
128 |
agtctgctctccattttataaggtaaatttcatacannnnnnngaccaat----ttgatacattgataatgatatgtcatag----------------aa |
207 |
Q |
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| T |
15639362 |
agtctgctctccattttataaggtaaatttcatacatttttttgaccaatttgattgatacattgataatgatatgtcataggtcatcatgtgtataaaa |
15639263 |
T |
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| Q |
208 |
ttaaatttacatatcattnnnnnnnttaaattttcattgtttgaattaatatcattcccacaggttct |
275 |
Q |
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| T |
15639262 |
ttaaattttcatatcattaaaaaaattaaattttcattgtttgaattaatatcattcctacaggttct |
15639195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 33519285 - 33519397
Alignment:
| Q |
42 |
cagtttttcatagctctgctcatttgcccgttagacatattttatcgcccaactcgcttctgcttcatccgtgttattcgtaacatagtctgctctccat |
141 |
Q |
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|||| ||| ||||||||||||||||| || || ||| | |||||||||||||| |||| ||| ||||||||||| ||||| |||||| ||||||| |||| |
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| T |
33519285 |
cagtcttttatagctctgctcatttgtccattcgaccttttttatcgcccaacccgctactgtttcatccgtgtcattcgcaacataatctgctcaccat |
33519384 |
T |
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| Q |
142 |
tttataaggtaaa |
154 |
Q |
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| T |
33519385 |
tttataaggtaaa |
33519397 |
T |
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