View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19598_high_4 (Length: 547)
Name: NF19598_high_4
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 3603003 - 3602471
Alignment:
| Q |
1 |
tgagaagaaaaattaatataagctaagaaacaaaaatcaaagcatacgaagtctcttccacgactaggaatcatcagctctagcgtttgcttcccatggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3603003 |
tgagaagaaaaattaatataagctaagaaacaaaaatcaaagcatacgaagtctcttccacgactaggaatcatcagctctagcgtttgcttcccttggg |
3602904 |
T |
|
| Q |
101 |
cgtattgatgatgactcgatcaacgacaactccatgttcagtcatcataggtgaattaatcttgcataaagcctaggcgagttattttagaatagatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602903 |
cgtattgatgatgactcgatcaacgacaactccatgttcagtcatcataggtgaattaatcttgcataaagcctaggcgagttattttagaatagatgtt |
3602804 |
T |
|
| Q |
201 |
ctgcaattgatcaattagtaactaactcactacattaaccaagggctaacttatggaaaccattttattaataacataaggatttgccaaaagctttatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602803 |
ctgcaattgatcaattagtaactaactcactacattaaccaagggctaacttatggaaaccattttattaataacataaggatttgccaaaagctttatg |
3602704 |
T |
|
| Q |
301 |
atggttgataaaactaaattgaaaatttctttttccaac-nnnnnnnagactcttgagatatttagatctactgcttccgaactgattaacaatttgtgg |
399 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602703 |
atggttgataaaactaaatcgaaaatttctttttccaacttttttttagactcttgagatatttagatctactgcttccgaactgattaacaatttgtgg |
3602604 |
T |
|
| Q |
400 |
gtgttgtgatgtaaagttgtaaacttaccaggctaaaatttctgatcttaaaatcacgtacattattaaccattctgatacaaatttaaagaatgaacaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602603 |
gtgttgtgatgtaaagttgtaaacttaccaggctaagatttctgatcttaaaatcacgtacattattaaccattctgatacaaatttaaagaatgaacaa |
3602504 |
T |
|
| Q |
500 |
ataaaaaatatgatgccaaaatatagtacttgt |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3602503 |
ataaaaaatatgatgccaaaatatagtacttgt |
3602471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University