View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_41 (Length: 270)
Name: NF19598_high_41
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 37934892 - 37935140
Alignment:
| Q |
18 |
aagtgaagacatttcctcgaatctacttaggcctttattagatagtgtaagaaagaagaaccaggtaacatgaagaactgtgattgtgttgcgatgtttc |
117 |
Q |
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| T |
37934892 |
aagtgaagacatttcctcgaatctacttaggcctttattagatagtgtaagaaagaagaaccaggtaacatgaagtactgtgattatgttgcgatgtttc |
37934991 |
T |
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| Q |
118 |
aggttcaggtagttgagaacaatcttgatgtacctaaaggtgcaaatgaagaaccatgtgacgtaaattatccttttcctttctcaattaactttggaac |
217 |
Q |
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| T |
37934992 |
aggttcaggtagttgagaacaatcttgatgtacctaaaggtgcaaatgaagaaccatgtgacgtaaattatccttttcctttctcaattagctttggaac |
37935091 |
T |
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| Q |
218 |
ggtggctgggtgggtagctagggtttaacttgaacggcaagctatggtggcga |
270 |
Q |
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| T |
37935092 |
ggtggc----tgggtagctagggtttaacttgaacggcaagctatggtggcga |
37935140 |
T |
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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 844906 - 844977
Alignment:
| Q |
18 |
aagtgaagacatttcctcgaatctacttaggcctttattagatagtgtaagaaagaagaaccaggtaacatg |
89 |
Q |
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| T |
844906 |
aagtgaagacatttcctcggatctacttaggcctttattagatagtgtaagaaaggagaaccaggtaacatg |
844977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 845313 - 845418
Alignment:
| Q |
98 |
tgattgtgttgcgatgtttcaggttcaggtagttgagaacaatcttgatgtacctaaaggtgcaaatgaagaaccatgtgacgtaaattatccttttcct |
197 |
Q |
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| T |
845313 |
tgattgtgttgcaatgcttcaggttcaggatgttgagaacaatcttgatatacctaaagatgctcctgaagaaccctgtgacgtaaattatctttgtcct |
845412 |
T |
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| Q |
198 |
ttctca |
203 |
Q |
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| T |
845413 |
ttctca |
845418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 10455355 - 10455426
Alignment:
| Q |
18 |
aagtgaagacatttcctcgaatctacttaggcctttattagatagtgtaagaaagaagaaccaggtaacatg |
89 |
Q |
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| T |
10455355 |
aagtgaagatgtttcctcgaatctagtcaggcctttactagatagtgtaagaaaggagaaccaggtaacatg |
10455426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 10455845 - 10455917
Alignment:
| Q |
132 |
gagaacaatcttgatgtacctaaaggtgcaaatgaagaaccatgtgacgtaaattatccttttcctttctcaat |
205 |
Q |
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| T |
10455845 |
gagaacagtcttgatgtaactaaagatacaaatgaagaaccgtgtgatgtaaatta-ctttttcctttctcaat |
10455917 |
T |
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