View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_high_43 (Length: 255)

Name: NF19598_high_43
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_high_43
NF19598_high_43
[»] chr5 (1 HSPs)
chr5 (5-255)||(37935166-37935417)
[»] chr4 (17 HSPs)
chr4 (14-149)||(10553293-10553428)
chr4 (14-149)||(10571023-10571158)
chr4 (169-244)||(10481344-10481419)
chr4 (1-75)||(10482452-10482526)
chr4 (13-75)||(10468313-10468375)
chr4 (2-77)||(10464547-10464622)
chr4 (2-77)||(10475482-10475557)
chr4 (174-247)||(10467221-10467294)
chr4 (2-77)||(10484704-10484779)
chr4 (169-246)||(6387392-6387469)
chr4 (1-77)||(829347-829422)
chr4 (13-72)||(8447397-8447456)
chr4 (14-72)||(8437044-8437102)
chr4 (168-230)||(10459796-10459858)
chr4 (172-221)||(10463461-10463510)
chr4 (169-217)||(10474407-10474455)
chr4 (166-230)||(10554468-10554532)
[»] chr3 (2 HSPs)
chr3 (1-149)||(25915031-25915179)
chr3 (1-90)||(25901013-25901102)
[»] chr2 (2 HSPs)
chr2 (158-230)||(25376341-25376413)
chr2 (5-65)||(25377304-25377364)
[»] chr8 (1 HSPs)
chr8 (1-75)||(42846162-42846236)
[»] chr1 (1 HSPs)
chr1 (25-73)||(50645258-50645306)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 37935417 - 37935166
Alignment:
Q  5 aattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctattagt 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37935417 aattctagcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccgcaaccaccatgttctattagt 37935318  T
Q  105 aattctaattttctcacatttattctctctgcaattat-aaataaacgctttgtagtgagggttggagatgagagttttgaaaaatttgttgacgcattt 203  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37935317 aattctaattttctcacatttattctctctgcaattttaaaataaacgctttgtagtgagggttggagatgagagttttgaaaaatttgttgacgcattt 37935218  T
Q  204 gaatcgcatgagaggtttcacggggagaagagagagtatttccgcaatcaat 255  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37935217 gtatcgcatgagaggtttgacggggagaagagagagtatttccgcaatcaat 37935166  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 10553293 - 10553428
Alignment:
Q  14 aagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctattagtaattctaat 113  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||    
T  10553293 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10553392  T
Q  114 tttctcacatttattctctctgcaattataaataaa 149  Q
    || ||| | | |||| |||||||||||||| |||||    
T  10553393 ttgctcgcctctattgtctctgcaattatagataaa 10553428  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 10571023 - 10571158
Alignment:
Q  14 aagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctattagtaattctaat 113  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||    
T  10571023 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10571122  T
Q  114 tttctcacatttattctctctgcaattataaataaa 149  Q
    || ||| | | |||| |||||||||||||| |||||    
T  10571123 ttgctcgcctctattgtctctgcaattatagataaa 10571158  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 10481419 - 10481344
Alignment:
Q  169 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtattt 244  Q
    ||||||||||| ||| |||| |||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  10481419 gagatgagagtgttgtaaaacttgttgacgcacctgaatcgcataagaggtttcacggggagaagagagagtattt 10481344  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10482526 - 10482452
Alignment:
Q  1 cataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 75  Q
    ||||||||| | ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  10482526 cataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc 10482452  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 10468375 - 10468313
Alignment:
Q  13 caagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 75  Q
    ||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||||||||||||    
T  10468375 caagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgtaatcc 10468313  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 10464622 - 10464547
Alignment:
Q  2 ataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 77  Q
    |||||||||| ||||||||||| |||||||| |||||||||||  | |||| ||| | ||||||||||||||||||    
T  10464622 ataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttcaacgtaatcctt 10464547  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 10475557 - 10475482
Alignment:
Q  2 ataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 77  Q
    |||||||| | ||||||||||| |||||||| |||||||||||  | |||| ||| ||||||||||||||||||||    
T  10475557 ataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactaaactttcaacgtaatcctt 10475482  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 10467294 - 10467221
Alignment:
Q  174 gagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttccg 247  Q
    |||||| ||| |||| |||||||||||  ||||| ||||||||||||||||||| | |||||| ||||||||||    
T  10467294 gagagtgttgtaaaacttgttgacgcacctgaattgcatgagaggtttcacgggcaaaagagatagtatttccg 10467221  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 10484779 - 10484704
Alignment:
Q  2 ataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 77  Q
    |||||||| | ||||||||||| |||||||| |||||||||||  | |||| ||| | ||||||||||||||||||    
T  10484779 ataaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaactagactttcaacgtaatcctt 10484704  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 6387469 - 6387392
Alignment:
Q  169 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttcc 246  Q
    ||||||| ||| |||||||| |||||||||||| |||||  ||| |||||||| |||||||||  |||||| ||||||    
T  6387469 gagatgacagtgttgaaaaacttgttgacgcatctgaatttcataagaggtttaacggggagacaagagaggatttcc 6387392  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 829347 - 829422
Alignment:
Q  1 cataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 77  Q
    ||||||||| | ||||| ||||| | |||||| |||||||||||| || ||| |||||||||||||| |||||||||    
T  829347 cataaattcaaacaagtcatatgtgaaagagaaactcactttcatagaatcgaaaccaaactttcaa-gtaatcctt 829422  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 8447397 - 8447456
Alignment:
Q  13 caagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaa 72  Q
    ||||||||||| |||| ||| |||||| ||||  |||||| |||||||||||||||||||    
T  8447397 caagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8447456  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 8437044 - 8437102
Alignment:
Q  14 aagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaa 72  Q
    |||||||||| |||| ||| |||||| ||||  |||||| |||||||||||||||||||    
T  8437044 aagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 10459858 - 10459796
Alignment:
Q  168 ggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 230  Q
    ||||| |||||| |||||||||||||| |||||  ||||| |||| ||| |||||||||||||    
T  10459858 ggagaggagagtgttgaaaaatttgttaacgcacctgaattgcataagatgtttcacggggag 10459796  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 10463510 - 10463461
Alignment:
Q  172 atgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggttt 221  Q
    |||||||| || |||||||||||||||||  |||||||||| ||||||||    
T  10463510 atgagagtgttaaaaaatttgttgacgcacctgaatcgcataagaggttt 10463461  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 10474455 - 10474407
Alignment:
Q  169 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagag 217  Q
    ||||||||||| || |||||||||||||||||| |||| ||||| ||||    
T  10474455 gagatgagagtgttaaaaaatttgttgacgcatctgaaccgcataagag 10474407  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 10554468 - 10554532
Alignment:
Q  166 ttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 230  Q
    ||||||||| | ||||||||||| ||||| || || |||||| |||| ||||||||||| |||||    
T  10554468 ttggagatgcgggttttgaaaaacttgttaacacacttgaattgcataagaggtttcacagggag 10554532  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 25915031 - 25915179
Alignment:
Q  1 cataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctat 100  Q
    ||||||||||||||||||||||||  |||||| |||||||||||   ||| | |||||||||||||||||||||||| ||||||||||||| |  | |||    
T  25915031 cataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttat 25915130  T
Q  101 tagtaattctaattttctcacatttattctctctgcaattataaataaa 149  Q
    ||||||||  ||||  ||| | | |||| |||||||| ||||| |||||    
T  25915131 tagtaatttgaattggctcgcctctattttctctgcatttatagataaa 25915179  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25901013 - 25901102
Alignment:
Q  1 cataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccac 90  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||   ||| | |||||||||||||||||||||||| ||||||||||||    
T  25901013 cataaattctaacaagtaatatgagaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttggcccacaaccac 25901102  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 25376413 - 25376341
Alignment:
Q  158 agtgagggttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 230  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||    
T  25376413 agtgaggatcggagatgagagttttgaaaaacttgttaacgcatctgaatcgcataagaggtttcaccgggag 25376341  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 25377364 - 25377304
Alignment:
Q  5 aattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttc 65  Q
    ||||| ||||||||||||| |||||||| ||||||||| | ||||||  ||||| ||||||    
T  25377364 aattcaatcaagtaatatgtggaagagaaactcacttttaatgagtcaaaaccatactttc 25377304  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42846162 - 42846236
Alignment:
Q  1 cataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 75  Q
    ||||||||| | ||||||||||| ||||||||  |||||||||| ||||||||||| ||||||||||| ||||||    
T  42846162 cataaattcaaacaagtaatatgtggaagagacgctcactttcaatgagtcggaactaaactttcaacataatcc 42846236  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 50645258 - 50645306
Alignment:
Q  25 ggaagagagactcactttcattgagtcggaaccaaactttcaacgtaat 73  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  50645258 ggaagagaaactcactttcaatgagtcggaactaaactttcaacgtaat 50645306  T

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