View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_47 (Length: 251)
Name: NF19598_high_47
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 40214523 - 40214747
Alignment:
| Q |
17 |
attgttttgttcttgacatattactgatgatacgagattctcatacaatctatataatacaaaggaagttaaaatgattggatatgttggagtggaggtg |
116 |
Q |
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| T |
40214523 |
attgttttgttcttgacatattactgatgatacgagattcacatacaatctatataatacaaaggaagttaaaataattggatatgttggagtggaggtg |
40214622 |
T |
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| Q |
117 |
gatgagccttaccctagaggtaatacgttctacattgatcccatgaatgaacatagttatcgatcgctttgtaatattgttagttttcagcttaaggagg |
216 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||| |
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| T |
40214623 |
gatgggccttatcctagaggtaatacgttctacattgatcccatgaatgaatatagttatcaatcgcttcgtaatattgttaggtttcagcttaaggagg |
40214722 |
T |
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| Q |
217 |
gtcttaaagcacgcctacccctttg |
241 |
Q |
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|||||||||| |||||||||||||| |
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| T |
40214723 |
gtcttaaagcgcgcctacccctttg |
40214747 |
T |
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