View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_49 (Length: 245)
Name: NF19598_high_49
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14003270 - 14003496
Alignment:
| Q |
1 |
cagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagggtttacaagacgatcc |
100 |
Q |
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| T |
14003270 |
cagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagggtttacaagacgatcc |
14003369 |
T |
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| Q |
101 |
atcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtggaaa |
200 |
Q |
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| T |
14003370 |
atcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtggaaa |
14003469 |
T |
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| Q |
201 |
ctctgcgcaagcgacaattaccaaggt |
227 |
Q |
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|| || ||||||||||||||||||||| |
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| T |
14003470 |
ctgtgagcaagcgacaattaccaaggt |
14003496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5767537 - 5767308
Alignment:
| Q |
1 |
cagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtg---ctagccagaaagagagacttgaattgagggtttacaagacga |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767537 |
cagattggggaaaagggcagcaaacatgatgatattttgatcttctaaacaagcggcgctagccagaaagagagacttgaattgagggtttacaagacga |
5767438 |
T |
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| Q |
98 |
tccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtgg |
197 |
Q |
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| T |
5767437 |
tccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtgg |
5767338 |
T |
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| Q |
198 |
aaactctgcgcaagcgacaattaccaaggt |
227 |
Q |
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| T |
5767337 |
aaactgtgagcaagcgacaattaccaaggt |
5767308 |
T |
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