View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_5 (Length: 515)
Name: NF19598_high_5
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 16287124 - 16286621
Alignment:
| Q |
1 |
ggggaagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagnnnnnnnnnnnnnatctagaagtttttgttgcagagtaagaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16287124 |
ggggaagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagttttttcttttttatctagaagtttttgttgcagagtaagaaat |
16287025 |
T |
|
| Q |
101 |
ccaacaccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaatccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16287024 |
ccaacaccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaatccac |
16286925 |
T |
|
| Q |
201 |
ttaggaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaacgtaattaccccctcgaaatatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16286924 |
ttaggaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaacgtaattaccccctcgaaatatcc |
16286825 |
T |
|
| Q |
301 |
caagagacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaattccttgtgtctcatgttatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16286824 |
caagagacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaattccttgtgtctcatgttatgt |
16286725 |
T |
|
| Q |
401 |
gtctcatttgagatgtgcacgcttcttaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaatatctttgcacttcata |
500 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16286724 |
gtctcatttgagatgtgcacgcttctaaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaatatctttgcacttcatc |
16286625 |
T |
|
| Q |
501 |
tatt |
504 |
Q |
| |
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|||| |
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| T |
16286624 |
tatt |
16286621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 17262639 - 17263158
Alignment:
| Q |
1 |
ggggaagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagnnnnnnnnnnnnnatctagaagtttttgttgcagagtaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
17262639 |
ggggaagcctgtgacagaaagtgttaaacaccaaaatagataagctttaatatgagttttttcttttttatctagaagtttttgtt-cagagtaagaaat |
17262737 |
T |
|
| Q |
101 |
ccaacaccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaatccac |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17262738 |
ccaacaccaaataacattgatgtcacaatgccagcaattgccatgctagtgcctttctttcttgatcttaagatggtgtctgaattcatctctaaaccac |
17262837 |
T |
|
| Q |
201 |
ttaggaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaacgtaattaccccctcgaaatatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17262838 |
ttaggaaaacatagtacataattcccaagtttgaaatggtttcaacagctaggattccacgtggattgtaaaacaaggtaattaccccctcgaaatatcc |
17262937 |
T |
|
| Q |
301 |
caagagacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaat-----------------tcct |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17262938 |
caagagacttcgactaacagaaaaaccagtctgcataaaagaaaagttcagaaattcttgtatttcttaatgttgaaattccttgtgactaattactcct |
17263037 |
T |
|
| Q |
384 |
tgtgtctcatgttatgtgtctcatttgagatgtgcacgcttcttaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaa |
483 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17263038 |
tgtgtctcatgttatgtgtctcatttgagatgggcacgcttcttaagaatatgattacttaagccaattttcaatggaaactattatgttgagactagaa |
17263137 |
T |
|
| Q |
484 |
tatctttgcacttcatatatt |
504 |
Q |
| |
|
|||||||||||||||| |||| |
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|
| T |
17263138 |
tatctttgcacttcatgtatt |
17263158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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