View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_high_9 (Length: 462)
Name: NF19598_high_9
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 2735510 - 2735942
Alignment:
| Q |
1 |
attggcaaaaataatgaaaaaagataattgggtttgaatcgttacctgaaaaaggaatcaactttggtaagaaacgaaaatggggtgtcttagattttga |
100 |
Q |
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| T |
2735510 |
attggcaaaaataatgaaaaaagataattgggtttgaatcgttacctgaaaaaggaatcaactttggtatgaaacgaaaatggggtgtcttagattttga |
2735609 |
T |
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| Q |
101 |
tttagaaaattgtaataataatcgaaaaagttaagatttttaatattatttatagtaataatttatatgaaatgagtgagtggagtggagaagaagaaac |
200 |
Q |
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| T |
2735610 |
tttagaaaattgtaataataatcgaaaaagttaagatttttaatattatttataataataatttatatgaaatgagtgagtggagtggagaagaagaaac |
2735709 |
T |
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| Q |
201 |
agatggcggattcaagttctgtggatggaaaaagattattcaccttttgcttggtaaaaaataacttataattgatgagctagattataggggattataa |
300 |
Q |
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| T |
2735710 |
agatggcggattcaagttctgtggatggaaaaagattattcaccttttgcttggtaaaaaataacttataattgatgagctagattataggggattataa |
2735809 |
T |
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| Q |
301 |
tatattgtgtcataaaaattcattttgtaagattaatttttctcaaagagattttgtaaaattattgtgaaatgatttatgtttcaatatgtttacttaa |
400 |
Q |
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| T |
2735810 |
tatattgtgtcataaaaattcattttgtaagattaatttttctcaaagagattttgtaaaattattgtgaaatgat-----tttcaatatgtttacttaa |
2735904 |
T |
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| Q |
401 |
aaataaattaaataataaacttattttgtaaacataat |
438 |
Q |
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| T |
2735905 |
aaataaattaaataataaacttattttgtaaacataat |
2735942 |
T |
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