View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_1 (Length: 586)
Name: NF19598_low_1
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_1 |
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| [»] scaffold0252 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 40185260 - 40185835
Alignment:
| Q |
1 |
ccgcggatttcactgctttctgatatggtgaggacacttgttcaacaaatatttggcctctgaaagtctgccttcttgaaataaggattcaaaaatttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185260 |
ccgcggatttcactgctttctgatatggtgaggacacttgttcaacaaatatttggcctctgaaagtctgccttcttgaaataaggattcaaaaatttga |
40185359 |
T |
|
| Q |
101 |
aggtaaactttatgagatcaagggtagttattcttactcaaaaccttcaggaattttgcagcatcctccatggtcccaaactttgaaatatactacacaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40185360 |
aggtaaactttatgaga---agggtagttattcttactcaaaactttcaggaattttgcagcatcctccatggtcccaaacttcgaaatatactacacaa |
40185456 |
T |
|
| Q |
201 |
atgatttaagggatgaccaccgcaaacgaagaaggtcaagtgcctcctcgaactttctgactcctaatagac----------tttcttgaatgtagtagc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40185457 |
atgatttaagggatgaccaccgcaaacgaagaaggtcaagtgcctcctcgaactttctgactcctaatagactttcaatcagtttcttgaatgtagtagc |
40185556 |
T |
|
| Q |
291 |
ttttg--atatatatataccatacttaccggttaactttagaaacaacatgtatgcagattctattctaccttgagtaagtaaagcatcaaccagaactt |
388 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40185557 |
ttttgatatatatatataccatacttaccggttaactttagaaacaacttgtatgcaccatctattctaccttgagtaagtaaagcatcaaccagaactt |
40185656 |
T |
|
| Q |
389 |
caaacaaatcatcatctacgccggcaagattctgttcaatcatcttagcaagagaaagtaatgctttgtctagttcaccagcatcacagtaccctttgat |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185657 |
caaacaaatcatcatctacgccggcaagattctgttcaatcatcttagcaagagaaagtaatgctttgtctagttcaccagcatcacagtaccctttgat |
40185756 |
T |
|
| Q |
489 |
caagatcttccaagtcttgatcacctcatagtcgt---ccatcatgtacacgcccctgatagtgaagcaaccgcaagct |
564 |
Q |
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| T |
40185757 |
caagatcttccaagtcttgatcacctcatagtcgttgaccatcatgtacacacccctgatagtgaagcaaccgcaagct |
40185835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 9e-47; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 43436504 - 43436330
Alignment:
| Q |
14 |
tgctttctgatatggtgaggacacttgttcaacaaatatttggcctctgaaagtctgccttcttgaaataaggattcaaaaatttgaaggtaaactttat |
113 |
Q |
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||||| |||||||||||||||||||||| ||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43436504 |
tgcttcctgatatggtgaggacacttgtacaatagatctttggcctctgaaagtctaccttcttgaaataaggattcaaaaatttgaaggtaaactgtat |
43436405 |
T |
|
| Q |
114 |
gagatcaagggtagttattcttactcaaaaccttcaggaattttgcagcatcctccatggtcccaaactttgaaatat |
191 |
Q |
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| ||| ||||| || || |||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
43436404 |
gggat---gggtaattttttaaactcaacaccctcaggaattctgcagcatcctccatggtcccaaacttcgaaatat |
43436330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 43427994 - 43427827
Alignment:
| Q |
22 |
gatatggtgaggacacttgttcaacaaatatttggcctctgaaagtctgccttcttgaaataaggattcaaaaatttgaaggtaaactttatgagatcaa |
121 |
Q |
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|||||||||||||||| ||| ||| | || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
43427994 |
gatatggtgaggacacctgtacaatagatctttggcctctgaaagtctaccttcttgaaataaggattcaaaaatttggaggtaaactgtttgagat--- |
43427898 |
T |
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| Q |
122 |
gggtagttattcttactcaaaaccttcaggaattttgcagcatcctccatggtcccaaactttgaaatata |
192 |
Q |
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| T |
43427897 |
gggtaattttttatactcaatgctttcaggaattccacagcatcctccacggtcccaaacttcgaaatata |
43427827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 43436283 - 43436233
Alignment:
| Q |
223 |
caaacgaagaaggtcaagtgcctcctcgaactttctgactcctaatagact |
273 |
Q |
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||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
43436283 |
caaacgaagcaggtcgagtgcctcctcaaactttctgactcctaatagact |
43436233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 43423294 - 43423238
Alignment:
| Q |
144 |
ccttcaggaattttgcagcatcctccatggtcccaaactttgaaatatactacacaa |
200 |
Q |
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| T |
43423294 |
ccttcaggaatttctcagcatcctccacggtcccaaactttgaaacatactgcacaa |
43423238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 43438806 - 43438750
Alignment:
| Q |
144 |
ccttcaggaattttgcagcatcctccatggtcccaaactttgaaatatactacacaa |
200 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
43438806 |
ccttcaggaatttctcagcatcctccacggtcccaaactttgaaacatactgcacaa |
43438750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 43427781 - 43427731
Alignment:
| Q |
223 |
caaacgaagaaggtcaagtgcctcctcgaactttctgactcctaatagact |
273 |
Q |
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||||||||||||||| || |||||||| ||||||||||||| ||||||||| |
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| T |
43427781 |
caaacgaagaaggtcgagcgcctcctcaaactttctgactcttaatagact |
43427731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 43427543 - 43427491
Alignment:
| Q |
457 |
tctagttcaccagcatcacagtaccctttgatcaagatcttccaagtcttgat |
509 |
Q |
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| T |
43427543 |
tctagttcgccggcatcacagtacccttggatcaagatggtccaagtcttgat |
43427491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 509
Target Start/End: Complemental strand, 43436036 - 43435996
Alignment:
| Q |
469 |
gcatcacagtaccctttgatcaagatcttccaagtcttgat |
509 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||| |
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| T |
43436036 |
gcatcacagtacccttggatcaagatagtccaagtcttgat |
43435996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 21967 - 21793
Alignment:
| Q |
14 |
tgctttctgatatggtgaggacacttgttcaacaaatatttggcctctgaaagtctgccttcttgaaataaggattcaaaaatttgaaggtaaactttat |
113 |
Q |
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||||| |||||||||||||||||||||| ||| | || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
21967 |
tgcttcctgatatggtgaggacacttgtacaatagatctttggcctctgaaagtctaccttcttgaaataaggattaaaaaatttgaaggtaaactgtat |
21868 |
T |
|
| Q |
114 |
gagatcaagggtagttattcttactcaaaaccttcaggaattttgcagcatcctccatggtcccaaactttgaaatat |
191 |
Q |
| |
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| ||| ||||| || || |||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
21867 |
gggat---gggtaattttttaaactcaacaccctcaggaattctgcagcatcctccatggtcccaaacttcgaaatat |
21793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 21746 - 21696
Alignment:
| Q |
223 |
caaacgaagaaggtcaagtgcctcctcgaactttctgactcctaatagact |
273 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
21746 |
caaacgaagaaggtcgagtgcctcctcaaactttctgactcctaatagact |
21696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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