View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_13 (Length: 439)
Name: NF19598_low_13
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 44100925 - 44100505
Alignment:
| Q |
18 |
attgagatgtgcacctgagatatgaccaattgagagaataatgaacatgaccgttaatccagcacaagctgcatttcccataagagtttctactccattg |
117 |
Q |
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| T |
44100925 |
attgagatgagcacctgagatatgaccaattgagagaataatgaacatgactgtcagtccagcacaagctgcatttcccataagagtttctactccattg |
44100826 |
T |
|
| Q |
118 |
tatttgttgttcactattggtcctgctgttgctgcatatattaatatgaacgttcctacaaactctgctccaatctgtgacacattttaacattcaaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44100825 |
tatttgttgttcactattggtcctgctgttgctgcatatattaatatgaacgttcctacaaactctgctccaatctgtgacacattttaacattccaaat |
44100726 |
T |
|
| Q |
218 |
tcaatattaattttacttttcctttttcattannnnnnnttaaaataatgtgacaaataataatattttagatacgttggaaaaatctacatttggaaca |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44100725 |
tcaatattaattttacttttcctttttcattagggggggttaaaataatgtgacgaataataatattttagatacgttggaaaaatctacatttggaaca |
44100626 |
T |
|
| Q |
318 |
ttccatgtgtattcaaaaatatg-nnnnnnnnnnnnnnnnnnnagtaatcactactaataactcaagtaatgctataagtagaaaagtagcacatcaata |
416 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44100625 |
ttccatgtgtattcaaaaatatgttttttctttatttttttttagtaatcactactaataactcaagtaatgctataagtagaaaagtagcacatcaata |
44100526 |
T |
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| Q |
417 |
aacccatgttaacctttgttt |
437 |
Q |
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||||||||||||||||||||| |
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| T |
44100525 |
aacccatgttaacctttgttt |
44100505 |
T |
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