View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_low_14 (Length: 438)

Name: NF19598_low_14
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_low_14
NF19598_low_14
[»] chr5 (2 HSPs)
chr5 (16-115)||(37495833-37495933)
chr5 (216-414)||(12463308-12463507)
[»] chr4 (2 HSPs)
chr4 (194-255)||(53920381-53920442)
chr4 (194-249)||(53403259-53403314)
[»] chr8 (2 HSPs)
chr8 (194-329)||(38760925-38761060)
chr8 (185-251)||(43327062-43327128)
[»] chr6 (1 HSPs)
chr6 (194-226)||(566478-566510)
[»] chr2 (1 HSPs)
chr2 (194-246)||(4917634-4917686)
[»] chr1 (1 HSPs)
chr1 (185-227)||(34145017-34145059)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 37495933 - 37495833
Alignment:
Q  16 attatcaactacatgcacgaatcaccaatatatcttgcnnnnnnntacatatctttctcattaaaaaa-ctatcaaccactatccaaaaataattttcat 114  Q
    |||||||||||||||||||||||||| |||||||||||       ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  37495933 attatcaactacatgcacgaatcaccgatatatcttgcaaaaaaatacatatctttttcattaaaaaaactatcaaccactatccaaaaataattttcat 37495834  T
Q  115 c 115  Q
    |    
T  37495833 c 37495833  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 414
Target Start/End: Original strand, 12463308 - 12463507
Alignment:
Q  216 gagagagaaattaaagagagatatcaaacttctcctatttattattataataaataataaggagagaaaagattatgatggaacttctccccttttcgtt 315  Q
    ||||||||||||  ||||||||||| |||||||||| |||  |||  ||| |||||| || ||||||||  |||| | ||| ||   |||| ||||| ||    
T  12463308 gagagagaaattggagagagatatctaacttctcctgtttggtatgctaagaaataagaaagagagaaattattagggtgggacccatccctttttcttt 12463407  T
Q  316 tcttcgctgatgtgggtagagaaat-gggtaacactactttcgtttttagtttcccccaaatatccttatcccaccttttcctcgtgtttgtttattttg 414  Q
    |||||||||||||||| |||||  | ||| ||||||||||| ||||  | ||||| | | ||| |||| ||||||||||||||| | |||||||||||||    
T  12463408 tcttcgctgatgtgggaagagagttcggggaacactacttttgtttccactttccactatatacccttgtcccaccttttcctcatttttgtttattttg 12463507  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 53920381 - 53920442
Alignment:
Q  194 gtttggttgcagtgaaataggagagagagaaattaaagagagatatcaaacttctcctattt 255  Q
    ||||||||||||||||||| | || ||||||||| |||||||||||||||||||||||||||    
T  53920381 gtttggttgcagtgaaatatgggatagagaaattgaagagagatatcaaacttctcctattt 53920442  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 53403259 - 53403314
Alignment:
Q  194 gtttggttgcagtgaaataggagagagagaaattaaagagagatatcaaacttctc 249  Q
    ||||||||||||| ||||||| ||||||||||||  ||||||||||||||||||||    
T  53403259 gtttggttgcagtcaaataggggagagagaaattggagagagatatcaaacttctc 53403314  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 329
Target Start/End: Complemental strand, 38761060 - 38760925
Alignment:
Q  194 gtttggttgcagtgaaataggagagagagaaattaaagagagatatcaaacttctcctatttattattataataaataataaggagagaaaagattatga 293  Q
    ||||||||| |||||||||||  ||||||||||| ||||||||||||||||||||||| |||  |||    | |||||| || |||| |||||||||||     
T  38761060 gtttggttggagtgaaatagggaagagagaaattgaagagagatatcaaacttctcctgtttggtatgcagagaaataagaaagagaaaaaagattatgg 38760961  T
Q  294 tggaacttctccccttttcgtttcttcgctgatgtg 329  Q
    ||| ||   |||| ||||| ||||||||| ||||||    
T  38760960 tgggacacatccctttttcatttcttcgcagatgtg 38760925  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 43327128 - 43327062
Alignment:
Q  185 ttacactaagtttggttgcagtgaaataggagagagagaaattaaagagagatatcaaacttctcct 251  Q
    |||||||  ||||||||||||||||||| | ||||||||||||  ||||||||||||||||||||||    
T  43327128 ttacactgtgtttggttgcagtgaaataagggagagagaaattggagagagatatcaaacttctcct 43327062  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 566478 - 566510
Alignment:
Q  194 gtttggttgcagtgaaataggagagagagaaat 226  Q
    |||||||||||||||||||||||||||||||||    
T  566478 gtttggttgcagtgaaataggagagagagaaat 566510  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 4917686 - 4917634
Alignment:
Q  194 gtttggttgcagtgaaataggagagagagaaattaaagagagatatcaaactt 246  Q
    ||||||||| ||||||||||| |||||||||||| ||  ||||||||||||||    
T  4917686 gtttggttggagtgaaataggggagagagaaattgaatggagatatcaaactt 4917634  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 34145017 - 34145059
Alignment:
Q  185 ttacactaagtttggttgcagtgaaataggagagagagaaatt 227  Q
    |||||||  ||||||||||||||||||||| ||||||||||||    
T  34145017 ttacactgtgtttggttgcagtgaaataggggagagagaaatt 34145059  T

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