View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_16 (Length: 422)
Name: NF19598_low_16
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 404
Target Start/End: Original strand, 33726156 - 33726564
Alignment:
| Q |
4 |
tatgaagtgtgaaccacacttattcgaacaactcactcactcctttccatgtatatgtgcataataatcgatgaaaatggacgtctctttgcgatatgga |
103 |
Q |
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| T |
33726156 |
tatgaagtgtgaaccacacttattcgaacaactcactcactcctttccatgtatatgtgcataataatcgatgaaaatggacgtctctttgcgatatgga |
33726255 |
T |
|
| Q |
104 |
agaattattactatgtgaccatatcgtcatagatgacttcacttatataaatggattagtcttttcatgaactctttttcattggaaattcctataagaa |
203 |
Q |
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|||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33726256 |
agaattattactatgtgaccatctcgtcatatatgacttgacttatataaatggattagtcttttcatgaactctttttcattggaaattcctatacgaa |
33726355 |
T |
|
| Q |
204 |
tttcttatattgtggtttcttgaatccatttatgaaagctggat-----tttaagttacatgagtggcactgaaggtcactttcggaactcatattcctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33726356 |
tttcttatattgtggtttcttgaatccatttatgaaagctggattttaatttaagttacatgagtggcactgaaggtcactttcggaactcatattcctt |
33726455 |
T |
|
| Q |
299 |
atggtcctctctctccnnnnnnnnnnnactgggttctattccttatggtcttatactcttattaccacttttcttattctccatat---gttacttcata |
395 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33726456 |
atggtcctctctctcctttttttttttactgggttctattccttatggtcttatactcttattaccacttttcttattctccatattacgttacttcata |
33726555 |
T |
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| Q |
396 |
gaactatgg |
404 |
Q |
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||||||||| |
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| T |
33726556 |
gaactatgg |
33726564 |
T |
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