View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_19 (Length: 405)
Name: NF19598_low_19
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 32112932 - 32112538
Alignment:
| Q |
1 |
cttgactagaacctgccatcaattaaatgttgtaaatgcgtatatgtgaattcatagatgatcgttacaatgtttacttttagaaaacattttcagtttt |
100 |
Q |
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| T |
32112932 |
cttgactagaatctgccatcaattaaatgttgtaaatgcgtatatgtgaattcatagatgatcgttacaatgtttacttttagaaaacattttcagtttt |
32112833 |
T |
|
| Q |
101 |
cattttctaaataacttaacaagccctaagcttctacatctatttaggatatctaaattcatttacgatccttgtgaaagtttcctcttctcatcgataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32112832 |
cattttctaaataacttaacaagccctaagcttctacatctatttaggatatctaaattcatttacgatccttgtgaaagtttcctcttctcatcgataa |
32112733 |
T |
|
| Q |
201 |
tgctacatatgttttgtttgttatcctgatgatgagtttgtgtggacatgtttctaagtagcttactttgatatttgggtgccgaattagttagttgtta |
300 |
Q |
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| T |
32112732 |
tgctacatatgttttgtttgttatcctgatgatgagtttgtgtggacatgtttctaagtagcttactttgatatttgggtgccgaattagttagttgtta |
32112633 |
T |
|
| Q |
301 |
ttgtcaaatctcacttactctcggcaatataaaagtgaactgagtatttggtgctaggaaggtttatcaaggaatatagtacttttggtcctatg |
395 |
Q |
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| T |
32112632 |
ttgtcaaatctcacttactctcagcaatataaaagtgaactgagtatttggtgctaggaaggtttatcaaggaatatagtacttttggtcctatg |
32112538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 2511134 - 2511176
Alignment:
| Q |
70 |
atgtttacttttagaaaacattttcagttttcattttctaaat |
112 |
Q |
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| T |
2511134 |
atgtttactttatgaaaacattttctgttttcattttctaaat |
2511176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 39425110 - 39425070
Alignment:
| Q |
71 |
tgtttacttttagaaaacattttcagttttcattttctaaa |
111 |
Q |
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||||||||||| ||| |||||||||||||||||||||||| |
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| T |
39425110 |
tgtttactttttaaaatcattttcagttttcattttctaaa |
39425070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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