View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_20 (Length: 402)
Name: NF19598_low_20
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 34275060 - 34274685
Alignment:
| Q |
16 |
gttgggacgtcaggaccaaatggatcctgggggcatgccatgccattctcaccaaagagctcagactgcacttcatcgccattcccttctgaaccatttt |
115 |
Q |
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| T |
34275060 |
gttgggacgtcaggaccaaatggatcctgggggcatgccatgccattctcaccaaagagctcagactgcacttcatcgccattcccttctgaaccatttt |
34274961 |
T |
|
| Q |
116 |
cagcatcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgcatcaggaacgacttctgcacttgtaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274960 |
cagcatcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgcatcaggaacgacttctgcacttgtaat |
34274861 |
T |
|
| Q |
216 |
gtcgatttgttcctcaggaacggactccaccttaatgacatgcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattc |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274860 |
gtcgatttgttcctcaggaacggactccaacttaatgacatgcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattc |
34274761 |
T |
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| Q |
316 |
aaccaattcaaaatcaacttgttacgcataacatactgctgttatttatttgacagtgcatttatattattatatt |
391 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274760 |
aaccaattcaaaatcaacttgttacgtataacatactgctgttatttatttgacagtgcatttatattattatatt |
34274685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 34281775 - 34281707
Alignment:
| Q |
105 |
tgaaccattttcagcatcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctc |
173 |
Q |
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| T |
34281775 |
tgaactattttcagcatcagagtctgtatcagcaaaggaactcgaatattcagttgcatcagggtcctc |
34281707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 20229778 - 20229857
Alignment:
| Q |
257 |
gcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaacttg |
336 |
Q |
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|||||||||||||||||||||||||| ||||||| || | |||| || || ||||||||| |||||||||| |||||| |
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| T |
20229778 |
gcttagccatcttcacctttttagttacctgttcaaaatctaaattcataactaaattcaatgaattcaaaattaacttg |
20229857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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