View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_low_22 (Length: 394)

Name: NF19598_low_22
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_low_22
NF19598_low_22
[»] chr7 (19 HSPs)
chr7 (220-386)||(21786048-21786214)
chr7 (216-379)||(21714730-21714893)
chr7 (230-378)||(21788774-21788922)
chr7 (19-102)||(21786332-21786415)
chr7 (216-310)||(21772551-21772645)
chr7 (216-312)||(21726432-21726528)
chr7 (244-375)||(15714168-15714305)
chr7 (244-386)||(21647390-21647538)
chr7 (230-338)||(21664683-21664791)
chr7 (231-337)||(21705199-21705305)
chr7 (246-345)||(21764601-21764703)
chr7 (230-346)||(21792549-21792665)
chr7 (216-287)||(21682241-21682312)
chr7 (230-345)||(21629534-21629655)
chr7 (230-345)||(21652732-21652853)
chr7 (334-379)||(21772508-21772553)
chr7 (264-341)||(21807657-21807734)
chr7 (245-346)||(21657010-21657114)
chr7 (225-345)||(21746077-21746200)
[»] scaffold0182 (1 HSPs)
scaffold0182 (316-379)||(25905-25968)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 220 - 386
Target Start/End: Complemental strand, 21786214 - 21786048
Alignment:
Q  220 aatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtat 319  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21786214 aatatttctgttgtaccttggttgtagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtat 21786115  T
Q  320 tgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctgatgatgtc 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21786114 tgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctgatggtgtc 21786048  T

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Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 216 - 379
Target Start/End: Complemental strand, 21714893 - 21714730
Alignment:
Q  216 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttc 315  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21714893 ctctaatatttctgttgtaccttggttgtagatgtaatgaggatgatattacgttgaagatcaagaagatgaaagggtgtctctaactgtgactcatttc 21714794  T
Q  316 gtattgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctga 379  Q
    |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  21714793 gtattgataaactatgctctctttctgcttttctttttggaaccatgtccttcttcttctctga 21714730  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 230 - 378
Target Start/End: Complemental strand, 21788922 - 21788774
Alignment:
Q  230 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaacta 329  Q
    |||||||||||   |||||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||  |||||||| ||||    
T  21788922 ttgtaccttggaattagatgtagtgaggatgattttacgctgaagatcaagaagatgagtgggtgtctctaactgggactcatttgttattgatacacta 21788823  T
Q  330 tgttctccttctccttttctttttggaaccatgtccttctccttctctg 378  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  21788822 tgttctccttctccctttccttttggaaccatgtccttctccttatctg 21788774  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 21786415 - 21786332
Alignment:
Q  19 gttagtataccacaaatagaaattatgcttaaactaataaaagttgaaatagtgataattaatgataggtaaacttaaactaat 102  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21786415 gttagtataccacaaatataaattatgcttaaactaataaaagttgaaatagtgataattaatgataggtaaacttaaactaat 21786332  T

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Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 21772645 - 21772551
Alignment:
Q  216 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactc 310  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21772645 ctctaatatttttgttgtaccttggttgtagatgtaatgaggatggtattacgctgaagatcaagaagatgaaagggtgtctctgactgtgactc 21772551  T

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Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 21726528 - 21726432
Alignment:
Q  216 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcat 312  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||| |||||||    
T  21726528 ctctaatatttctgttgtaccttggttgtagatgtaatgaggatgatattacgccgacgatcaagaagatgaaagggtgtctttgactgggactcat 21726432  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 15714305 - 15714168
Alignment:
Q  244 tagatgtaatgaggatgatatt-acgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttc------gtattgataaactatgttctc 336  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||      ||||||||| ||||| || ||    
T  15714305 tagatgtaatgaggat-atatttacgctgtagatcaagaagatgagtgggtgtctctgactgtgactcatttcgtaatggtattgatacactatattgtc 15714207  T
Q  337 cttctccttttctttttggaaccatgtccttctccttct 375  Q
    ||||||||||||| |||||||||  || |||||||||||    
T  15714206 cttctccttttctgtttggaaccccgttcttctccttct 15714168  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 386
Target Start/End: Complemental strand, 21647538 - 21647390
Alignment:
Q  244 tagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgta------ttgataaactatgttctcc 337  Q
    |||||| | |||||||||  |||||||||||||||| |||||||  |||||||||| | || |||||| || |||      |||||| ||| ||||||||    
T  21647538 tagatggattgaggatgagtttacgctgaagatcaaaaagatgagtgggtgtctctgattgggactcacttggtaatggtattgatacactgtgttctcc 21647439  T
Q  338 ttctccttttctttttggaaccatgtccttctccttctctgatgatgtc 386  Q
    ||||||||||| ||||| |||||| ||||||||||||| ||||||||||    
T  21647438 ttctccttttccttttgaaaccatttccttctccttctttgatgatgtc 21647390  T

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Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 21664791 - 21664683
Alignment:
Q  230 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaacta 329  Q
    ||||||||||| | |||||  ||||||| |||| |||||| |||||||||||||||||  ||||||||| | ||||||||||||| ||||||||| | ||    
T  21664791 ttgtaccttgggtttagatccaatgagggtgattttacgcagaagatcaagaagatgagtgggtgtctccagctgtgactcatttagtattgatacaata 21664692  T
Q  330 tgttctcct 338  Q
    |||||||||    
T  21664691 tgttctcct 21664683  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 337
Target Start/End: Complemental strand, 21705305 - 21705199
Alignment:
Q  231 tgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaactat 330  Q
    ||||||||||   |||||||  |||||||||| ||||| |||||||||||||||||   |||||| ||| |||||||||||||| ||||||||| |||||    
T  21705305 tgtaccttggaattagatgtggtgaggatgattttacgttgaagatcaagaagatgtgtgggtgtttctgactgtgactcatttggtattgatacactat 21705206  T
Q  331 gttctcc 337  Q
    |||||||    
T  21705205 gttctcc 21705199  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 345
Target Start/End: Complemental strand, 21764703 - 21764601
Alignment:
Q  246 gatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcat---ttcgtattgataaactatgttctccttctc 342  Q
    |||||| |||||||||  ||| |||||||||| |||||||||  |||||||||| ||||||||||||   ||  |||||||| |||||||||||||||||    
T  21764703 gatgtagtgaggatgactttatgctgaagatctagaagatgagtgggtgtctctgactgtgactcatttgttattattgatacactatgttctccttctc 21764604  T
Q  343 ctt 345  Q
    |||    
T  21764603 ctt 21764601  T

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Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 346
Target Start/End: Complemental strand, 21792665 - 21792549
Alignment:
Q  230 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaacta 329  Q
    |||||||||||   |||||| | ||||||| || ||||| || |||||||||||||||  ||||| ||||||| ||||||||| | | ||||||| ||||    
T  21792665 ttgtaccttggaattagatgcagtgaggatcattttacgatgcagatcaagaagatgattgggtggctctaacagtgactcatctggcattgatacacta 21792566  T
Q  330 tgttctccttctccttt 346  Q
    |||| ||||||||||||    
T  21792565 tgttgtccttctccttt 21792549  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 21682312 - 21682241
Alignment:
Q  216 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatga 287  Q
    |||||| |||| | || |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  21682312 ctctaagatttctattataccttgggtgtagatttaatgaggatgatattacgctgaagatcaagaagatga 21682241  T

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Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 21629655 - 21629534
Alignment:
Q  230 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatt------tcgtattgat 323  Q
    |||||||||||   |||||||| |||||||||  || || ||||||||||||||||||   ||| |||||||||||||||||||      | ||||||||    
T  21629655 ttgtaccttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgat 21629556  T
Q  324 aaactatgttctccttctcctt 345  Q
      ||||||||||||||||||||    
T  21629555 gcactatgttctccttctcctt 21629534  T

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Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 21652853 - 21652732
Alignment:
Q  230 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcattt------cgtattgat 323  Q
    |||||||||||   |||||||| | |||||||| ||| || |||||||||||||||||  |||||||| | ||||||||||||||       |||| |||    
T  21652853 ttgtaccttggaattagatgtagttaggatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggttaaggtatcgat 21652754  T
Q  324 aaactatgttctccttctcctt 345  Q
    | ||||||||||||||||||||    
T  21652753 acactatgttctccttctcctt 21652732  T

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Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 21772553 - 21772508
Alignment:
Q  334 ctccttctccttttctttttggaaccatgtccttctccttctctga 379  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||    
T  21772553 ctccttctccttttctttttggaaccatgtccttcttcttccctga 21772508  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 21807657 - 21807734
Alignment:
Q  264 ttacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaactatgttctccttct 341  Q
    |||||||||| |||||||||||||   ||||||||| ||||  ||||||||  |||||||| |||||||||| |||||    
T  21807657 ttacgctgaacatcaagaagatgagttggtgtctctgactgccactcatttgttattgatacactatgttcttcttct 21807734  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 346
Target Start/End: Complemental strand, 21657114 - 21657010
Alignment:
Q  245 agatgtaatgaggatgatattacgctgaagatcaagaagatgaaaggg---tgtctctaactgtgactcatttcgtattgataaactatgttctccttct 341  Q
    ||||||| |||||||||  || || ||||||||||||||||||  |||   ||||||| | |||||||||| |  |||||||  |||||||||||| |||    
T  21657114 agatgtagtgaggatgagtttccgttgaagatcaagaagatgagtgggtattgtctctgattgtgactcatctgctattgatgcactatgttctccatct 21657015  T
Q  342 ccttt 346  Q
    |||||    
T  21657014 ccttt 21657010  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 21746200 - 21746077
Alignment:
Q  225 ttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggt---gtctctaactgtgactcatttcgtattg 321  Q
    |||| |||||||||||   | |||||| ||||| |||  ||| || |||||||||||||||||  ||||   |||||| | ||||||||||||  |||||    
T  21746200 ttgtattgtaccttggacttggatgtagtgaggttgagtttatgcagaagatcaagaagatgagtgggtattgtctctgaatgtgactcatttgttattg 21746101  T
Q  322 ataaactatgttctccttctcctt 345  Q
    ||| | ||||||||||| ||||||    
T  21746100 atacattatgttctcctcctcctt 21746077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 25968 - 25905
Alignment:
Q  316 gtattgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctga 379  Q
    ||||||||| ||||| |||||||||||| ||| | |||||| ||||||||||||||||||||||    
T  25968 gtattgatacactatattctccttctccgtttttctttggacccatgtccttctccttctctga 25905  T

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