View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_24 (Length: 380)
Name: NF19598_low_24
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 4203909 - 4203550
Alignment:
| Q |
6 |
cagagagaatacatttcagaaaatactggaaacaatgtttcaaaaatttccaatctatttttaaaatgcactttcgtaaacttcgataatgatttcttct |
105 |
Q |
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| T |
4203909 |
cagagagaatacatttcagaaaatactgaaaacaatgtttcaaaaatttccaatctatttttaaaatgcactttcgtaaacttcgataatgatttcttct |
4203810 |
T |
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| Q |
106 |
ttctgtcctcatatatattttctgattttcctcatctttgtttgcattttctttctgtttcaagttgcatgtgcaacatgcagcaattttctgacaaaat |
205 |
Q |
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| T |
4203809 |
ttctgtcctcatatatattttctgattttcctcatctttgtttgcattttctttctgtttcaagttgcatgtgcaacatgcagcaattttctgacagaat |
4203710 |
T |
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| Q |
206 |
tctattagaatcagtttggtttaatatatctcattttggcttgttcagaaagnnnnnnntatttactggataattacttgtggatttattgatgaaactc |
305 |
Q |
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| T |
4203709 |
tctattagaatcagtttggtttaatatatctcattttggcttgttcagaaagaaaaaaatatttactggataattacttgtggatttattgatgaaactc |
4203610 |
T |
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| Q |
306 |
tggaaacaactttcaatcagagttgtgttacaaaagggaaatacagaaaatacaaaaact |
365 |
Q |
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| T |
4203609 |
tggaaacaactttcgatcagagttgtgttacaaaagggaaatacagaaaatacaaaaact |
4203550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 4202403 - 4202315
Alignment:
| Q |
266 |
atttactggataattacttgtggatttattgatgaaactctggaaacaactttcaatcagagttgtgttacaaaagggaaatacagaaa |
354 |
Q |
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||||||| ||||||| |||||||||||||||| ||||| |||||| || |||| | || |||||||| ||||| |||||||||||||| |
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| T |
4202403 |
atttacttgataattgcttgtggatttattgacaaaactttggaaataaatttctaacaaagttgtgtgacaaaggggaaatacagaaa |
4202315 |
T |
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