View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_25 (Length: 373)
Name: NF19598_low_25
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 105 - 363
Target Start/End: Original strand, 4222624 - 4222886
Alignment:
| Q |
105 |
tcagaaggtaaaggatcaacacaatgtaaagccaatttcattctattaagcaattcatctcctatggacggtgcatccctca--------aaatcaaaca |
196 |
Q |
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| T |
4222624 |
tcagaaggtaaaggatcaacacaatgtaaagccaatttcattctattaagcaattcatctcctatggacggtgcatccctcatgagttcaaaatcaaaca |
4222723 |
T |
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| Q |
197 |
cttcattaatccattaatctttaactatagatgcaacatattgacgcaactccatgccattggtcggttctccaagcggtttaccagttaaaatctccaa |
296 |
Q |
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| T |
4222724 |
cttcattaatccattaatctttaactatagatgcaacatattgacgcaactccatgccattggtcggttctccaagcggtttaccagttaaaatctccaa |
4222823 |
T |
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| Q |
297 |
aaggataacaaaagctgtaaatatgggtcgttgtgcatggtaggtttctttgtggttaaaatctctg |
363 |
Q |
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| T |
4222824 |
aaggataacaaaagctgtaaatatgggtcgttg----tggtaggtttctttgtggttaaaatctctg |
4222886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4222486 - 4222590
Alignment:
| Q |
1 |
ggtattacatgtattatcctttctccactaattcaagtaacacaaactttacttcactttattcatttgttaaaccttagctccaacttcaacttattct |
100 |
Q |
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| T |
4222486 |
ggtattaaatgtatcatcctttctccactaattcaagtaacacaaactttacttcactttattcatttgttaaaccttagctccaacttcaacttattct |
4222585 |
T |
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| Q |
101 |
cttct |
105 |
Q |
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||||| |
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| T |
4222586 |
cttct |
4222590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 3908255 - 3908054
Alignment:
| Q |
106 |
cagaaggtaaaggatcaacacaatgtaaagccaatttcattctattaagcaattcatctcctatggacggtgcatccctca--------aaatcaaacac |
197 |
Q |
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|||||||| | |||||||||||||| ||||| ||||||| | ||||||| | |||||||||||||| ||| ||||||||| ||||||||||| |
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| T |
3908255 |
cagaaggtgatggatcaacacaatgcaaagctaatttcaatgtattaagaagttcatctcctatggttggtccatccctcatgagttccaaatcaaacac |
3908156 |
T |
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| Q |
198 |
ttcattaatccattaatctttaactatagatgcaacatattgacgcaactccatgccattggtcggttctccaagcggtttaccagttaaaatctccaaa |
297 |
Q |
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|||||| |||| | |||||||| || ||||||||||||||| |||| ||||| ||||| || |||||||| | |||||||||||||||| ||||||| |
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| T |
3908155 |
ttcatttgtccactcttctttaacaatggatgcaacatattgaggcaagtccattccatttgttggttctcctggtggtttaccagttaaaagctccaaa |
3908056 |
T |
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| Q |
298 |
ag |
299 |
Q |
| |
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|| |
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| T |
3908055 |
ag |
3908054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 3924271 - 3924118
Alignment:
| Q |
106 |
cagaaggtaaaggatcaacacaatgtaaagccaatttcattctattaagcaattcatctcctatggacggtgcatccctca--------aaatcaaacac |
197 |
Q |
| |
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|||||||| | |||||||||||||| ||||| ||||||| | ||||||| | |||||||||||||| ||| ||||||||| ||||||||||| |
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| T |
3924271 |
cagaaggtgatggatcaacacaatgcaaagctaatttcaatgtattaagaagttcatctcctatggttggtccatccctcatgagttccaaatcaaacac |
3924172 |
T |
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| Q |
198 |
ttcattaatccattaatctttaactatagatgcaacatattgacgcaactccat |
251 |
Q |
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|||||| |||||| |||||||| || ||||||||||||||| |||| ||||| |
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| T |
3924171 |
ttcatttgtccattcttctttaacaatggatgcaacatattgaggcaagtccat |
3924118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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