View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_27 (Length: 355)
Name: NF19598_low_27
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 5755651 - 5755926
Alignment:
| Q |
10 |
ataattctactatcacttcttcaaatacataaataaataccataattcaaactttcttaggtatatatattgcaccattaggccttgttttctaacacaa |
109 |
Q |
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| T |
5755651 |
ataattctactatcacttcttcaaatacataaataaataccataattcaaacttccttaggtatatatattgcaccattaggccttgttttctaacacag |
5755750 |
T |
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| Q |
110 |
cgagtttgtctaaatcacgagtttgtttcagataacaccgtgatatcaaacat--acacttaatatggtttcatagcttaagaaaaatcaaaaacaaatt |
207 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5755751 |
tgagtttgtctaaatcacgagtttgtttctgctaacaccgtgatatcaaacatacacacttaatatggtttcatagcttaagaaaaatcaaaaaca---- |
5755846 |
T |
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| Q |
208 |
aaatttggtggatcttatgctagtatgctac-nnnnnnnnccaagttcaaaattacattttgtgattatttctatgtaac |
286 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5755847 |
aaatttggtggatcttatgctagtatgctactttttttttccaagttcaaaattacattttgtgattatttctatgtaac |
5755926 |
T |
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