View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19598_low_28 (Length: 355)

Name: NF19598_low_28
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19598_low_28
NF19598_low_28
[»] chr3 (20 HSPs)
chr3 (1-345)||(22458769-22459113)
chr3 (1-345)||(22481750-22482094)
chr3 (13-254)||(22468240-22468481)
chr3 (13-240)||(22431444-22431670)
chr3 (13-254)||(22630731-22630972)
chr3 (13-147)||(22358294-22358428)
chr3 (13-147)||(22635795-22635929)
chr3 (39-148)||(22368230-22368339)
chr3 (1-64)||(22615539-22615602)
chr3 (21-135)||(22436934-22437048)
chr3 (60-254)||(22632204-22632398)
chr3 (17-225)||(22443035-22443243)
chr3 (2-129)||(22179475-22179602)
chr3 (23-124)||(30989607-30989708)
chr3 (2-129)||(22028058-22028185)
chr3 (2-129)||(22187046-22187173)
chr3 (23-129)||(22115143-22115249)
chr3 (12-129)||(22657357-22657474)
chr3 (1-129)||(21945682-21945810)
chr3 (23-129)||(21937211-21937317)
[»] chr4 (2 HSPs)
chr4 (5-114)||(29610855-29610961)
chr4 (166-253)||(29611001-29611088)
[»] chr1 (2 HSPs)
chr1 (2-64)||(34980285-34980347)
chr1 (12-64)||(2305776-2305828)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 22458769 - 22459113
Alignment:
Q  1 cctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  22458769 cctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgca 22458868  T
Q  101 agagttgtttttccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  22458869 agagttgtttttccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaactt 22458968  T
Q  201 caaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458969 caaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaaga 22459068  T
Q  301 tgattggatatgcaagctatgttcttttccacttgtatcattcat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22459069 tgattggatatgcaagctatgttcttttccacttgtatcattcat 22459113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 22481750 - 22482094
Alignment:
Q  1 cctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  22481750 cctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgca 22481849  T
Q  101 agagttgtttttccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  22481850 agagttgtttttccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaactt 22481949  T
Q  201 caaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481950 caaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttctccatgttgaagtttgttgcagtactgcttgacccttgttccaaaga 22482049  T
Q  301 tgattggatatgcaagctatgttcttttccacttgtatcattcat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22482050 tgattggatatgcaagctatgttcttttccacttgtatcattcat 22482094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 22468240 - 22468481
Alignment:
Q  13 ttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 112  Q
    |||||||||||||| | |||||||  |||||||||||||||||||||| |||||||||| ||| |  | ||||||||| ||||| || | ||| ||||||    
T  22468240 ttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggctatagtggttttt 22468339  T
Q  113 ccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaa 212  Q
    ||  |||||||| ||||||| |||| |||||  ||| || || ||||  ||||||||||| ||||||| | | ||| || |||  ||||||| || ||||    
T  22468340 cccagtcctcccattccaactatggagacaacggtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctcgtggctcttcaaatcccacaa 22468439  T
Q  213 catcatcttcatcgatacaaaattgagcctttcgaaggttct 254  Q
     |||| ||||||| ||| ||||| |||| | |||||||||||    
T  22468440 gatcagcttcatccatataaaatggagcgtctcgaaggttct 22468481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 22431444 - 22431670
Alignment:
Q  13 ttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 112  Q
    ||||||||  |||| |||||||||| ||||||||| | |||||||||||||||||| || | |||| | ||||||||| ||||| |  ||||| ||||||    
T  22431444 ttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggttttt 22431543  T
Q  113 ccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaa 212  Q
    ||  |||||||| |||| ||||||| ||| | |||| || ||||| |  | | ||||| ||||||||| | ||||| ||||||  ||||||| || ||||    
T  22431544 cccagtcctcccattcc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaa 22431642  T
Q  213 catcatcttcatcgatacaaaattgagc 240  Q
    ||||| ||||||| ||| ||||| ||||    
T  22431643 catcagcttcatccatataaaatggagc 22431670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 22630731 - 22630972
Alignment:
Q  13 ttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 112  Q
    |||||||||||||| | |||||||  |||||||| |||||||||||||||||||||||| |||    | ||||||||  ||||| |||||||| |||||     
T  22630731 ttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaattttcttggcaagagtggttttc 22630830  T
Q  113 ccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaa 212  Q
    ||  |||||||| |||||||||| | ||||| |||| |  || ||||  |||||| || ||||||||| | | ||| || |||  | |||||||| ||||    
T  22630831 cccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaatttgtctcgtggctcgtcaaagcccacaa 22630930  T
Q  213 catcatcttcatcgatacaaaattgagcctttcgaaggttct 254  Q
    ||||| ||||||| | | | ||| |||| | |||||||||||    
T  22630931 catcagcttcatccaaatacaatggagcatctcgaaggttct 22630972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 22358294 - 22358428
Alignment:
Q  13 ttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 112  Q
    |||| ||||||||| | |||||||  | ||||||||| ||| |||||||||||| |||| |||    | ||||||||| |||||||| ||||| ||||||    
T  22358294 ttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggttttt 22358393  T
Q  113 ccttgtcctccctttccaacaatggtgacaattgt 147  Q
    ||  |||||||| |||||||||||| |||||||||    
T  22358394 cccagtcctcccattccaacaatggagacaattgt 22358428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 22635795 - 22635929
Alignment:
Q  13 ttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgttttt 112  Q
    |||| ||||||||| | |||||||  | ||||||||| |||||||||||| ||| |||| |||    | ||||||||| |||||||| ||||| ||||||    
T  22635795 ttctgtattgtatggtcgagacaccgtaatccatacacgacaatcaaagtattttacgacctttgggttgtcaaaaactttcttcgctagagtggttttt 22635894  T
Q  113 ccttgtcctccctttccaacaatggtgacaattgt 147  Q
    |||||||||||| ||||||  |||| |||||||||    
T  22635895 ccttgtcctcccattccaaagatggagacaattgt 22635929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 22368230 - 22368339
Alignment:
Q  39 tgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttccaacaatggt 138  Q
    ||||||||| | ||||||||||||||||||||| ||| |  | ||||||||| ||||| || ||||| ||||||||  |||||||| ||||||||||||     
T  22368230 tgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatgga 22368329  T
Q  139 gacaattgtg 148  Q
    ||||| ||||    
T  22368330 gacaactgtg 22368339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22615539 - 22615602
Alignment:
Q  1 cctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 64  Q
    ||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  22615539 cctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgt 22615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 22436934 - 22437048
Alignment:
Q  21 tgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcc 120  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||| | ||  ||| | |  |||||||| ||||| || ||||| ||||||||||| ||    
T  22436934 tgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaactttcttggccagagtagtttttccttgccc 22437033  T
Q  121 tccctttccaacaat 135  Q
    |||| |||| |||||    
T  22437034 tcccattcctacaat 22437048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 254
Target Start/End: Original strand, 22632204 - 22632398
Alignment:
Q  60 agtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgtgtgcacttctct 159  Q
    ||||||||||||||||    | ||||||||| ||||| || ||||| ||||| ||  |||||||| |||||| ||||| ||||| |||| |  || ||||    
T  22632204 agtgtttaacgatctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctct 22632303  T
Q  160 ctcctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttct 254  Q
      ||||||||| ||||| ||||||| | | | ||||  ||||||| || ||||||||| ||||||| ||| ||||| |||| | |||||||||||    
T  22632304 tccctctaccagccaattaattagtttctctattggctcttcaaatcccacaacatcagcttcatccatataaaatggagcgtctcgaaggttct 22632398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 22443035 - 22443243
Alignment:
Q  17 atattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttcctt 116  Q
    |||||| |||||||||||||  ||||||||| | |||| |||||||| ||||| | ||| |  | ||||||||  |   | || ||||| ||||||||      
T  22443035 atattgaatgattgagacaccatgatccataaaagacagtcaaagtgcttaactaccttttggttgtcaaaaatttgtctggctagagtggtttttccca 22443134  T
Q  117 gtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaagcctacaacatc 216  Q
     ||||||| |||||||||||| ||||| |||| |  |||||||  ||||||||||| ||||||| | | ||| ||||||  |||||||||| |||| |||    
T  22443135 atcctcccattccaacaatggagacaactgtgcggtcttctcttccctctaccaacaaatcaatcaatttgtctcttggctcttcaaagccaacaatatc 22443234  T
Q  217 atcttcatc 225  Q
    | |||||||    
T  22443235 agcttcatc 22443243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 22179602 - 22179475
Alignment:
Q  2 ctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaa 101  Q
    |||| |||||||||   ||| ||||||||||||||| | ||||||||| ||||||||||||||  || ||| |  ||   ||||||||| ||||| || |    
T  22179602 ctcaacaatccttcagcattatatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggcta 22179503  T
Q  102 gagttgtttttccttgtcctccctttcc 129  Q
    |||||||||||||||| |||||| ||||    
T  22179502 gagttgtttttccttgccctcccattcc 22179475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 30989607 - 30989708
Alignment:
Q  23 tatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctc 122  Q
    ||||||||||||||| ||||||||||| ||||||||||||||  || ||  ||  | | ||||||||| ||||||| |||||| ||||| ||||| ||||    
T  30989607 tatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctc 30989706  T
Q  123 cc 124  Q
    ||    
T  30989707 cc 30989708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 22028185 - 22028058
Alignment:
Q  2 ctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaa 101  Q
    |||| |||||||||   ||| ||||||||||||||| | ||||||||| ||||||||||||||   | ||| |  ||   ||||||||| ||||| || |    
T  22028185 ctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggcta 22028086  T
Q  102 gagttgtttttccttgtcctccctttcc 129  Q
    |||||||||||||||| |||||| ||||    
T  22028085 gagttgtttttccttgccctcccattcc 22028058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 22187173 - 22187046
Alignment:
Q  2 ctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaa 101  Q
    |||| |||||||||   ||| ||||||||||||||| | ||||||||| ||||||||||||||   | ||| |  ||   ||||||||| ||||| || |    
T  22187173 ctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggcta 22187074  T
Q  102 gagttgtttttccttgtcctccctttcc 129  Q
    |||||||||||||||| |||||| ||||    
T  22187073 gagttgtttttccttgccctcccattcc 22187046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 22115249 - 22115143
Alignment:
Q  23 tatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctc 122  Q
    ||||||||||||||| ||||||||||| ||||||||||||||  || ||| |  ||   ||||||||| ||||| |  ||||| ||||||||||| ||||    
T  22115249 tatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctc 22115150  T
Q  123 cctttcc 129  Q
    || ||||    
T  22115149 ccattcc 22115143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 22657357 - 22657474
Alignment:
Q  12 cttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttt 111  Q
    ||||||||||||| ||||| |||||| ||||||| ||| |||| |||||||||  ||| | ||  ||   ||||||||| || || |||||||| |||||    
T  22657357 cttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttt 22657456  T
Q  112 tccttgtcctccctttcc 129  Q
    |||||| |||||| ||||    
T  22657457 tccttgccctcccattcc 22657474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 21945810 - 21945682
Alignment:
Q  1 cctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgca 100  Q
    ||||| ||||||||| | ||  ||||||||||||||  ||||||||||| ||||||||||||||  || ||  |  ||   ||||||||| ||||| ||     
T  21945810 cctcaacaatccttcaacatcatatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggct 21945711  T
Q  101 agagttgtttttccttgtcctccctttcc 129  Q
    ||||| ||||||||||| |||||| ||||    
T  21945710 agagtggtttttccttgccctcccattcc 21945682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 21937317 - 21937211
Alignment:
Q  23 tatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctc 122  Q
    |||| |||||||||| ||||||||||| ||||||||||||||  |||||  |  ||   ||||||| | ||||| || ||||| ||||||||||| ||||    
T  21937317 tatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctc 21937218  T
Q  123 cctttcc 129  Q
    || ||||    
T  21937217 ccattcc 21937211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 29610855 - 29610961
Alignment:
Q  5 agcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagag 104  Q
    |||||||||||||||||||||||||| || ||| ||||||||||| ||   |||||||||| ||||| ||||||   ||||||||| ||||| |  ||||    
T  29610855 agcaatccttctatattgtatgattgtgatactgtgatccatacacgattgtcaaagtgttcaacgaccttgtt---gtcaaaaactttcttagttagag 29610951  T
Q  105 ttgtttttcc 114  Q
    | ||||||||    
T  29610952 tagtttttcc 29610961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 29611001 - 29611088
Alignment:
Q  166 taccaaccaatcaattagtatgtttcttggaacttcaaagcctacaacatcatcttcatcgatacaaaattgagcctttcgaaggttc 253  Q
    ||||| ||||||||||| ||| | ||||||  ||||||||||| |||| ||| ||||||| ||  ||||| |||||||||||||||||    
T  29611001 taccagccaatcaattaatatttctcttggctcttcaaagcctgcaacgtcagcttcatccatgtaaaatggagcctttcgaaggttc 29611088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 34980347 - 34980285
Alignment:
Q  2 ctcagcaatccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 64  Q
    ||||||||| |||| |||||||||||||| |||||| ||||||||||| |||| |||||||||    
T  34980347 ctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtgt 34980285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 2305776 - 2305828
Alignment:
Q  12 cttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 64  Q
    ||||||||||||||||||| |||| | ||||||||||| |||| |||||||||    
T  2305776 cttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtgt 2305828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University