View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_29 (Length: 340)
Name: NF19598_low_29
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 174 - 332
Target Start/End: Original strand, 2213450 - 2213612
Alignment:
| Q |
174 |
aatatacgtgtgttgatatcattggcacacactacataccatttaggatttttaggatcatcagagccgatatcaaattccttacgattagcacaagttt |
273 |
Q |
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| T |
2213450 |
aatatacgtgtgttgatatcattggcacacactacataccatttaggatttttaggatcatcagagccgatatcaaattccttacgattagcacaagttt |
2213549 |
T |
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| Q |
274 |
gattcagttcaagctccacttt----ttccacacttcccaacacaacttgacaaagtataatc |
332 |
Q |
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| T |
2213550 |
gattcagctcaagctccactttttccttccacacttcccaacacaacttgacaaagtataatc |
2213612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 2213317 - 2213417
Alignment:
| Q |
80 |
tgtcaaagcaataaagatcaacgaatggttttgtttagtcaatgagtgattaaaaatattaaatttgatgtttag----atatgtttctgtgtttgtcaa |
175 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2213317 |
tgtcaaagcaataaagatcaacgaatggttttatttactcaatgagtgattaaaaatattaaatttgatgtttagatatatatgtttctgtgtttgtcaa |
2213416 |
T |
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| Q |
176 |
t |
176 |
Q |
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| T |
2213417 |
t |
2213417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 2204184 - 2204290
Alignment:
| Q |
225 |
ttaggatcatcagagccgatatcaaattccttacgattagcacaagtttgattcagttcaagctccactttttccacacttcccaacacaacttgacaaa |
324 |
Q |
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||||||||||||||||| |||||||||| || || |||||||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
2204184 |
ttaggatcatcagagccagtatcaaattcatttcgggaagcacaagattgatgaaactcaagctccactttttcaacacttcccaatacaacttgacaaa |
2204283 |
T |
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| Q |
325 |
gtataat |
331 |
Q |
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|||||| |
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| T |
2204284 |
ttataat |
2204290 |
T |
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