View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_3 (Length: 548)
Name: NF19598_low_3
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 527
Target Start/End: Complemental strand, 7045979 - 7045466
Alignment:
| Q |
11 |
ttatactaactcggacttgtctactctgtagatcggaattggcctgcttgttttgcaacagctttctgggataaatggtgttcttttttattccagtacc |
110 |
Q |
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| T |
7045979 |
ttatactaactcggacttgtctactctgtagatcggaattggcctgcttgttttgcaacagctttctgggataaatggtgttcttttttattccagtacc |
7045880 |
T |
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| Q |
111 |
atctttcaaaatgctggtacgttatactgatttgttataattattctcaagtcatgtgataggagcaatattagataaaagtccttataaatgttcaccg |
210 |
Q |
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| T |
7045879 |
atctttcaaaatgctggtacgttatactgatttgttataattattctcaagtcatgtgataggagcaatattagataaaagtccttataaatgttcactg |
7045780 |
T |
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| Q |
211 |
atttgaataagcccaatttggattagcttctagtgagagcttctcaattaaaatcacttttaggttcttaactcataaaagtcattataagcttataann |
310 |
Q |
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| T |
7045779 |
atttgaataagcccaatttggattagcttctagtgagagcttctcaattaaaatcacttttaggttcttaactcataaaagtcattataagcttataa-- |
7045682 |
T |
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| Q |
311 |
nnnnnnnnnatggataaactaaatgagagagcttctgaaaaagtgtagattcataaacaaattaaaacttgtactgaaagctattgattaagaaactcat |
410 |
Q |
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| T |
7045681 |
-ttttttttatggataaactaaatgagagagcttctgaaaaagtttagattcataaacaaattaaaacttgtactgcaagctattgattaagaaactcat |
7045583 |
T |
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| Q |
411 |
agtcattaacttctaatgnnnnnnnncttctttttcaaaaagggcttgttaagaagtttatatgaactcaataaacaatttattttctgtcataaaccat |
510 |
Q |
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| T |
7045582 |
agtcattaacttctaatgttttttttcttctttttcaaaaagggcttgttaataagtttatatgaactcaatatacaatttattttctgtcataaaccat |
7045483 |
T |
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| Q |
511 |
atgttagaattagagga |
527 |
Q |
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| T |
7045482 |
atgttagaattagagga |
7045466 |
T |
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