View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19598_low_30 (Length: 333)
Name: NF19598_low_30
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_30 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 56 - 333
Target Start/End: Original strand, 47534781 - 47535058
Alignment:
| Q |
56 |
taaatagttttattcttgaaggaagaaataataaaattgaatgattttcttttttaagtagaaataactttaaaacgaaggaagtgttaaagaaatcgat |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47534781 |
taaatagttttattcttgaaggaagaaataataaaattgaatgattttcttttttaagtagaaataactttaaaacgaaggaagtgttaaagaaatcgat |
47534880 |
T |
|
| Q |
156 |
aatctgaaagtacagtagctgctagctatgccaatttcacgattatgtccaaacatacatccatttctacaaatcaaagcatgcaacggaaacaacaacg |
255 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47534881 |
aatctgaaagtacagttgctgctagctatgccaatttcacgattatgtccaaacatacatccatttctacaaatcaaagcatgcaacggaaacaacaacg |
47534980 |
T |
|
| Q |
256 |
acaatggatcgaagacagttacaggaaaacccaaggtcagtccccagctgaaccggtggtccagggctcgtgcaatac |
333 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47534981 |
acaatggatcgaagtcagttacaggaaaacccaaggtcagtccccagctgaaccggtggtccagggctcgtgcaatac |
47535058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 47532914 - 47532947
Alignment:
| Q |
16 |
atcacaaattctaagaattaatattaccataaga |
49 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
47532914 |
atcacagattctaagaattaatattaccataaga |
47532947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 47543057 - 47543105
Alignment:
| Q |
282 |
aaacccaaggtcagtccccagctgaaccggtggtccagggctcgtgcaa |
330 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
47543057 |
aaacccaatgttagtccccagctgaacaggtggtatagggctcgtgcaa |
47543105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University