View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_31 (Length: 325)
Name: NF19598_low_31
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 34044256 - 34043956
Alignment:
| Q |
9 |
agcaaaggtgtgctctgcagaataagaagagaaaaattccaatgaatattagtatatattctcctagcaagactgttggacaaaacatagaaatagcaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34044256 |
agcaaaggtgtgctctgcagaataagaagagaaaaattccaatgaatattagtatatattctccaagcaagactgttggacaaaacatagaaatagcaaa |
34044157 |
T |
|
| Q |
109 |
ttataatgagcttgaagtacgaaatcattaatgcatagaaaattctgtttacctccttgagcttgaactattatctcattaatgctacggcgtttaaaat |
208 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34044156 |
ttataatgagcttgaagtatgaaatcattaatgcatagaaaattctgtttacctccttgagcttgaactatgatctcattaatgctacggcgtttaaaac |
34044057 |
T |
|
| Q |
209 |
cacagaattttttgaaataagggtaatagtggttcagaaagcagaaggcagtcaccgatctcattgcccattgaagttcttggaggatgagaagctccat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34044056 |
cacagaattttttgaaataagggtaatagtggttcagaaagcagaaggcagtcaccgatctcattgcccattgaagttcttggagaatgagaagctccat |
34043957 |
T |
|
| Q |
309 |
t |
309 |
Q |
| |
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| |
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| T |
34043956 |
t |
34043956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 4045274 - 4045574
Alignment:
| Q |
9 |
agcaaaggtgtgctctgcagaataagaagagaaaaattccaatgaatattagtatatattctcctagcaagactgttggacaaaacatagaaatagcaaa |
108 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
4045274 |
agcaaaggcgtgctctgcagaataagaagagaaaaattccaatgaatattagtatatattctcctagcatgactgttggactaaacatagaaatagcaaa |
4045373 |
T |
|
| Q |
109 |
ttataatgagcttgaagtacgaaatcattaatgcatagaaaattctgtttacctccttgagcttgaactattatctcattaatgctacggcgtttaaaat |
208 |
Q |
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|| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
4045374 |
ttctaacgagcttgaagtatgaaatcattaatgcatagaaaattctgtttacctccttgagcttgaactatgatctcattaatgctatggcgtttaaaac |
4045473 |
T |
|
| Q |
209 |
cacagaattttttgaaataagggtaatagtggttcagaaagcagaaggcagtcaccgatctcattgcccattgaagttcttggaggatgagaagctccat |
308 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
4045474 |
cacagaattttttgaaataagggtaatagtagttcagaaagcagaaggcagtcactgatctcattggcaattgaagttcttggagaatgagaagctccat |
4045573 |
T |
|
| Q |
309 |
t |
309 |
Q |
| |
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| |
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|
| T |
4045574 |
t |
4045574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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