View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_32 (Length: 303)
Name: NF19598_low_32
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 14725205 - 14724933
Alignment:
| Q |
19 |
aaagtgttggcaagacttcatttcactaaaagaatttaatgaagacaatagagcagtgtcattaggaggagtgatagagaagccaacaaacatgagtatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14725205 |
aaagtgttggcaagacttcatttcactaaaagaatttaatgaagacaatagagcagtgtcattaggaggagtgatagagaagccaacaaacatgagtatg |
14725106 |
T |
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| Q |
119 |
acaaggggggaatttagaggcatnnnnnnnngtggttaaagtatagtaaaaacttcttcacttatgtctccatgctttgatggaagaaacaagcaatatc |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14725105 |
acaaggggggaatttagaggcataaaaaaaagtggttaaagtatagtaaaaacttcttcacttatgtctccatgctttgatggaagaaacaagcaatatc |
14725006 |
T |
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| Q |
219 |
tagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatctgccctt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14725005 |
tagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatctgccctt |
14724933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 17598557 - 17598829
Alignment:
| Q |
19 |
aaagtgttggcaagacttcatttcactaaaagaatttaatgaagacaatagagcagtgtcattaggaggagtgatagagaagccaacaaacatgagtatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17598557 |
aaagtgttggcaagacttcatttcactaaaagaatttaatgaagacaatagagtagtgtcattaggaggagtgatagagaagccaacaaacatgagtgtg |
17598656 |
T |
|
| Q |
119 |
acaaggggggaatttagaggcatnnnnnnnngtggttaaagtatagtaaaaacttcttcacttatgtctccatgctttgatggaagaaacaagcaatatc |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17598657 |
acaaggggggaatttagaggcataaaaaaaagtggttaaagtatagtaaaaacttcttcacttatgtctccatgctttgatggaagaaacaagcaatatc |
17598756 |
T |
|
| Q |
219 |
tagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatctgccctt |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17598757 |
tagaaatatatccttttctgtatcctttagtccttcaaaactaattaaaagtacatccataatatctgccctt |
17598829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 31245764 - 31245675
Alignment:
| Q |
202 |
aagaaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatctgccctt |
291 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
31245764 |
aagaaacaagcaatatctaaaaatatatccttttctgtatcctctagtccatcaaaactaattcgaagtacatccataatatctgtcctt |
31245675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 31029073 - 31029153
Alignment:
| Q |
205 |
aaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatct |
285 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||| || ||| ||||||||||| | ||| | ||||||||||||||| |
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| T |
31029073 |
aaacaagcaatatcaagaaatatatctttttccatattctctagcccttcaaaacttaatcgcaacacatccataatatct |
31029153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 31033409 - 31033489
Alignment:
| Q |
205 |
aaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatct |
285 |
Q |
| |
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|||||| ||||||| |||||||| | ||||| | |||| ||||||||||||||| | ||| || ||||||||||||||| |
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| T |
31033409 |
aaacaaacaatatcaagaaatatcacattttccgattcctctagtccttcaaaacttaatcgcagcacatccataatatct |
31033489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 13609815 - 13609729
Alignment:
| Q |
202 |
aagaaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatctgcc |
288 |
Q |
| |
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||||||||||||||||| ||||| || ||||||||| ||||||||||||| ||| |||||| || |||||||||||||| |||||| |
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| T |
13609815 |
aagaaacaagcaatatccagaaaaatctccttttctatatcctttagtccatcataactaagccgtagtacatccataatttctgcc |
13609729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 16371881 - 16371917
Alignment:
| Q |
201 |
gaagaaacaagcaatatctagaaatatatccttttct |
237 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
16371881 |
gaagaaacaagcaatatcaagaaatatatccttttct |
16371917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 17439510 - 17439455
Alignment:
| Q |
205 |
aaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaact |
260 |
Q |
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|||||||||||||| |||||||| |||||||| |||| |||||| || |||||||| |
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| T |
17439510 |
aaacaagcaatatcaagaaatatttccttttcagtatgctttagcccatcaaaact |
17439455 |
T |
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