View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19598_low_35 (Length: 294)
Name: NF19598_low_35
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 31536938 - 31537215
Alignment:
| Q |
1 |
aagacattggggccagaaaaatctgctaattttgtttcaaaggctttgtttctgattagcattggtagcaatgacctctttgattatgaacgtaatgaaa |
100 |
Q |
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| T |
31536938 |
aagacattggggccagaaaaatctgctaattttgtttcaaaggctttgtttctgattagcattggtagcaatgacctctttgattatgaacgtaatgaaa |
31537037 |
T |
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| Q |
101 |
gtggagtatttcatttgggcaaggaagaaaatttggctgttctacagcaaaactattactcttttataatggtacgtacataattttctataattacgac |
200 |
Q |
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| T |
31537038 |
gtggagtatttcatttgggcaaggaagaaaatttggctgttctacagcaaaactattactcttatataacggtacgtacataattttctataattacgac |
31537137 |
T |
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| Q |
201 |
tcacacattgcgcatcagtcacttgcactaattctcgatgagaaactattatataagggtatgtacatagttttctat |
278 |
Q |
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| T |
31537138 |
tcacacattgcgcatcagtcacttgcactaattctcgatgagaaactattatataagggtatgtacatagttttctat |
31537215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 31537189 - 31537241
Alignment:
| Q |
165 |
tataatggtacgtacataattttctataattacgactcacacattgcgcatca |
217 |
Q |
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| T |
31537189 |
tataagggtatgtacatagttttctataattacgattcacactttacgcatca |
31537241 |
T |
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