View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19598_low_38 (Length: 276)
Name: NF19598_low_38
Description: NF19598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19598_low_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 14724839 - 14724591
Alignment:
| Q |
12 |
acatcatctgtcgagtttatgtaaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14724839 |
acatcatctgtcgagtttatgtaaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaa |
14724740 |
T |
|
| Q |
112 |
ctttgtaaacttcatctactccatgctctctgaagatatggctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14724739 |
ctttgtaaacttcatctactccatgctctctgaagatatggctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggc |
14724640 |
T |
|
| Q |
212 |
caatttttcaagttgttcaacttgaacattatcaagaacttcaagagat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14724639 |
caatttttcaagttgttcaacttgaacattatcaagaacttcaagagat |
14724591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 17598923 - 17599168
Alignment:
| Q |
12 |
acatcatctgtcgagtttatgtaaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17598923 |
acatcatctgtcgagtttatgtaaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaa |
17599022 |
T |
|
| Q |
112 |
ctttgtaaacttcatctactccatgctctctgaagatatggctatctctagatattacgatgattctacttcctgtgcct----agccattatcatttca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
17599023 |
ctttgtaaacttcatctactccatgctctctgaagatatggctatctctagatattacgatgattctacttcttgtgcctagccagccattctcatttca |
17599122 |
T |
|
| Q |
208 |
tggccaatttttcaagttgttcaact---tgaacattatcaagaac |
250 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
17599123 |
tggccaatttttccagttgttcaacttgatgaacattatcaagaac |
17599168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 31245562 - 31245321
Alignment:
| Q |
13 |
catcatctgtcgagtttatgtaaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaac |
112 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||| ||| | || ||||| ||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
31245562 |
catcatctgtcaagtatatgtaaccgctcatgatatcatcactcttgaaagccttcctacaaaacaattgaagggcattattatgatccaagagtcgaac |
31245463 |
T |
|
| Q |
113 |
tttgtaaacttcatctactccatgctctctgaagatatggctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggcc |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||||| |||||||||||||||| || | |||| ||| |
|
|
| T |
31245462 |
tttgtacacttcatctactccatgctctctcaagatatgaacatctctagaaattatgatgattctactccctgtgcctagccattctcgtgtcatagcc |
31245363 |
T |
|
| Q |
213 |
aatttttcaagttgttcaacttg---aacattatcaagaact |
251 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
31245362 |
aatttatccagttgttcaacttgatcaacattatcaagaact |
31245321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 31029363 - 31029445
Alignment:
| Q |
104 |
gagtcgaactttgtaaacttcatctactccatgctctctgaagatatggctatctctagatattacgatgattctacttcctg |
186 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||| | |||||||| ||||||||| |||| ||||||||||| |||| |
|
|
| T |
31029363 |
gagtggaactttgtaaacttcatcaactccatactcattcaagatatgctcatctctagaaattataatgattctactccctg |
31029445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 31019482 - 31019559
Alignment:
| Q |
104 |
gagtcgaactttgtaaacttcatctactccatgctctctgaagatatggctatctctagatattacgatgattctact |
181 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||| | |||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
31019482 |
gagtggaactttgtaaacttcatcaactccatactcattcaagatatgctcatctctagaaattataatgattctact |
31019559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 256
Target Start/End: Complemental strand, 13609593 - 13609367
Alignment:
| Q |
33 |
taaccgctcatgacatcgtcaatttttaaagctttcctacaaaacaattgaagggcatcattatgatttatgagtcgaactttgtaaacttcatctactc |
132 |
Q |
| |
|
||||| |||| || ||| ||| |||| ||||||||||||||||||||| |||||||||||||| ||| || ||| |||| |||| ||||||||||| |
|
|
| T |
13609593 |
taaccactcaagatatcatcacttttgaaagctttcctacaaaacaatcgaagggcatcattaagatctaatgctcgtacttcataaatttcatctactc |
13609494 |
T |
|
| Q |
133 |
catgctctctgaagatatggctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggccaatttttcaagttgttcaac |
232 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||| |||||||| |||| ||||| |||| || | | ||| ||| ||| || ||||||||||| |
|
|
| T |
13609493 |
catgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgttcaac |
13609394 |
T |
|
| Q |
233 |
t---tgaacattatcaagaacttcaag |
256 |
Q |
| |
|
| | |||||||||||||||| |||| |
|
|
| T |
13609393 |
tttatcaacattatcaagaactacaag |
13609367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University